Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1917 |
Symbol | pabC |
ID | 1043160 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2160260 |
End bp | 2161075 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637145324 |
Product | 4-amino-4-deoxychorismate lyase |
Protein accession | NP_744071 |
Protein GI | 26988646 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
TIGRFAM ID | [TIGR03461] aminodeoxychorismate lyase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.307364 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000254306 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGCACAGCT GGATCGACGG CCAGCCGGCG ACTGCACTCA ACCTGCAGAA CCGCGGCCTG GCCTATGGCG ATGGCCTGTT CGAAACCATC GCTGTGCGAG GCGCCCGGCC CAGCTTGCTG GACGGCCACC TCGCACGCCT GGCACTGGGC TGCCAGCGCC TGGCGATCAA CGCCGATCTG GCGCTGGTGC GCGACGAGCT GCTGCGCTAC GCCAGCCAGC TGGGTGAGGG TGTCGTCAAA CTCATCCTTA CCCGTGGCGA TAGCCAGCGT GGCTATGCGC CAGCTGTCGA TGCAGCGCCG CGGCGTATCC TGCAAGGCAG CCCATTACCC CGTTATCCTG TCGAGCATGC TGAGCATGGC GTGCGTTTGT TCCCTTGCCA TACCCGGCTT GGGGAACAAC CACTGCTGGC CGGCCTCAAA CACCTTAACC GCCTGGAGCA GGTGCTGGCC CGTGCCGAAT GGCAGGACAG CGACCATGCC GAAGGCCTGA TGCGTGACGC GCAGGGCAGG GTGATCGAAG GGGTATACAG CAATCTGTTT CTGGTGCGCG ATGGCGTGCT GCTTACCGCC GACCTTAGCC GTTGTGGCGT GGCGGGCGTG ATGCGTGCCG CACTGCTGGA ACAGGCCCCG CTGCTGGGTA TTGCGGTACA GGTCTGCGAC CTGTCGTTCG AGGCGCTGGA GCAAGCGAAT GAAGTATTTG TTTGCAATAG CGTTTACGGC ATTTGGCCCG TGCGTGGCGT AGCCGCGCTA AACTGGTCGC CGGGCCCGCT CACTCGTAAA CTGCAGGCCG TTGCCCGTAC GTTACTGGAA ACCTGA
|
Protein sequence | MHSWIDGQPA TALNLQNRGL AYGDGLFETI AVRGARPSLL DGHLARLALG CQRLAINADL ALVRDELLRY ASQLGEGVVK LILTRGDSQR GYAPAVDAAP RRILQGSPLP RYPVEHAEHG VRLFPCHTRL GEQPLLAGLK HLNRLEQVLA RAEWQDSDHA EGLMRDAQGR VIEGVYSNLF LVRDGVLLTA DLSRCGVAGV MRAALLEQAP LLGIAVQVCD LSFEALEQAN EVFVCNSVYG IWPVRGVAAL NWSPGPLTRK LQAVARTLLE T
|
| |