Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1883 |
Symbol | |
ID | 1043209 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 2114376 |
End bp | 2116283 |
Gene Length | 1908 bp |
Protein Length | 635 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637145291 |
Product | hypothetical protein |
Protein accession | NP_744038 |
Protein GI | 26988613 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.393139 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.366802 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTTGACAC CTATCAGTTT TGCCAGGTGT TCAGGTTCCG GGGCGGTGTT ATATCTATGC CAACTCTCGA ATCGGAAATG TGCAAGGCGG AGATATTCAT ACATGGACAT GCCAGACGTT TCACACCTTA ATGAACGTAT GAACTCTGTC GACCTGGACG CGCTTGGCAG TGCCGATCTG ATGACTTGGA TTAGCTATCC CGGCATCGCC GAACACGACC TGATATATAT CAACTGGCGG GGGTGCAAGG CCGACAACAG TGCCGAGGAC CTCTTTGGCG AACGCGAAGT ATTGAGCCTG GATGCTGGCC GCGGGGAGAT CCTGATCGAT AACGCACTCG TCACTGCCTT GCGCGGTGGC CAGGTGTTCT ATTCGTTCAC GCGTCTGGAC AACGCCGGCA ATCCTGTGGG GCCTGAGTCC AAGCGTCGTT TCTTCTTCGT TGACCGGCCC GCTGAAGGCA TATGGGCTTT GCCGGTTGCC CACTTTCAAG ATGCCCATGA GGGGGTGATC GACGTCAACC TGCTCAATCC CGAAGGCATA TTGCTGGCAA CAGCGCCCTA TGCCGCCATG GCCAAAGATG ACAAGGTTTT CCTGAGTTGG GAGCCCTGGC TCAACGAGTC CTTGCCAGGT GTGCCGTTCG AGCAAGTACT GGAAGTGCAG GAGTCTGATC CTGGCCGACC ACTGCTGTGG CACCTGGATA TCGGCCAGGT CTTCATGTAT CTCGGCGGCT TCGCCTTTTT GCACTATCGC ATCGAATTCG CCGATGGCAC CAGCAGCCGG TCGCCAGTGC AGCGCTTCGA CATCGTTTCG CCCGCCGCCG GCGACCCACC GCCGGCACCT TTGCTGGCGG CGCCACGTAT CCCCGGGGCG ACGGATGGCG CGCTGGATCC TGATGACGAA ACCTATCGCG CCGGCCTTCT GGTGGAGGTG GACCCCTATC CGGAGCTGGA ATTGGGCGAT TCGCTGGTGC TCTATGCCGT AGGGCCGGAG GTGACGCTGC GCAGCCTGCG TGTGGATGCG AGTTCGGTGG ACAGCAAACG CTTGACCTTC CACCTGGAGC GGGAGTGGCT GCAGAGCGAG GTCAACCGCG GCAAGCGGTT CGCGTTCAGC TATGAGTTTT CGCGTCAGGG CGCGCAGAGG CGCTCCCAAG TGCTGGATCT GGTCTTGCAG CGCAAGCTTT ACCTGCCTTT ACCGATAATC CCGGACGCCA CGCAGGAAGA CGGTGACGCG TCGTACCAGG GCGTGGTCCA TCCAAGCAGG CTGGAGTCTG GCGCCAAAGT GCGAATCCCG GCAGAGGCCG AGCTGGGTGA TGGCGCGGAG CCTGCGCCGA CCGTCAACCT GCATTGGGAA GGGCACGGCA GCACGGGGGC AGCCATCGTT CCCCGGCCGC CGTCAGGTGA CACACGCCTG TTCACGGTGC CGCGGTCGGC CATGGCCGCC AATCTGGGTA GACGTCTGTG GGTGTACTAC ACCGTCACCC GCGCCGGCGA AACGCCACGC ACATCAGAAA AGTTCGAGCT GCGGGTAAGC GATTTCGATC AGCGCAGCTA CCCGATAATT CAGGTCGAAG GTGCCGAGAA CCGGGAATTG AAACTGCATG AGGTTCCAGT GGGTGGCGCT TTGTGCACGC TGCCTTTTTG GACGTTCATG GCAGAAGGGC AATTGCTGGG TATCGAGGCG CTAGGCCGTT CGGCATCTGG CCAGGATGTC ACGCATATTC TGCGCCCCCC CACCGAGGCG GTGACATACG ACGAATATTC TGATGGCGTT ATTAAAGCCT ACCTGCCCAA ACAGTTTCTC GGGAACTTGG ACTTAGGCAA AGATTTCAGA TTGACCGTAT CTGCAAGTTT CGATGACGGC GAAACCTGGC GGGCATTTCC AATCGTTGAT CTTAAGCTGG TTTCTTAA
|
Protein sequence | MLTPISFARC SGSGAVLYLC QLSNRKCARR RYSYMDMPDV SHLNERMNSV DLDALGSADL MTWISYPGIA EHDLIYINWR GCKADNSAED LFGEREVLSL DAGRGEILID NALVTALRGG QVFYSFTRLD NAGNPVGPES KRRFFFVDRP AEGIWALPVA HFQDAHEGVI DVNLLNPEGI LLATAPYAAM AKDDKVFLSW EPWLNESLPG VPFEQVLEVQ ESDPGRPLLW HLDIGQVFMY LGGFAFLHYR IEFADGTSSR SPVQRFDIVS PAAGDPPPAP LLAAPRIPGA TDGALDPDDE TYRAGLLVEV DPYPELELGD SLVLYAVGPE VTLRSLRVDA SSVDSKRLTF HLEREWLQSE VNRGKRFAFS YEFSRQGAQR RSQVLDLVLQ RKLYLPLPII PDATQEDGDA SYQGVVHPSR LESGAKVRIP AEAELGDGAE PAPTVNLHWE GHGSTGAAIV PRPPSGDTRL FTVPRSAMAA NLGRRLWVYY TVTRAGETPR TSEKFELRVS DFDQRSYPII QVEGAENREL KLHEVPVGGA LCTLPFWTFM AEGQLLGIEA LGRSASGQDV THILRPPTEA VTYDEYSDGV IKAYLPKQFL GNLDLGKDFR LTVSASFDDG ETWRAFPIVD LKLVS
|
| |