| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1619 |
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| Symbol | truD |
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| ID | 1044864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1815079 |
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| End bp | 1816137 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637145019 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | NP_743776 |
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| Protein GI | 26988351 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.241866 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAC TGGAATTGCT GGGCCCGCGC GCATCGGGCG AACCCCTGGG CACCGCCATC
CTCAAAGCGG TCGCCGAAGA CTTTCAGGTT GACGAAGTCC TCGATATACC GCTATCGGGC
CAAGGCGAGC ACCTGTGGCT GTGGGTCGAG AAGCGTGATC TGAACACTGA AGAAGCCGCC
CGGCGCCTCG CCCGCGCCGC TGGCGTGCCG GTGCGCAGCA TCAGCTACGC CGGCCTGAAG
GACCGCCAGG CGCTGACCCG CCAGTGGTTC AGCCTGCACC TGCCGGGCAA GGCCGATCCG
GATCTGTCGC GTGCCGAGGA TGCCAGCCTG CGTGTGCTCA AGCAGGTGCG TCACCAGCGC
AAACTGCAGC GCGGCGCGCA TTCGGCCAAC GGGTTCACCT TGCGCCTGAC CGCCCTGGCT
GCCGATCACC AGGCGGTGGA TGCCCGCCTG GAGCAGCTGA GGCAGCAAGG TGTGCCCAAC
TATTTCGGCA CCCAGCGCTT CGGGCACGGG GGTGGCAACG TCCATGACGC CCTCGATTGG
GCCGCGCGCA AGGCTTTGCC TGAACAGCGC AACGTGCGTT CGCGGCTGCT TTCGGCCGGG
CGCAGCTACC TGTTCAATCA GTTGCTGGCT GCGCGTGTGG CTGACGGTAG CTGGGCCCGA
GCCCAGGTCG GCGACCTGCT GGCGTTCACC GACAGCCGCA GTTTCTTCCC GGCGGGTGAG
GCGGAATGTG CCGACCCGCG CCTGGCGATT CTCGACCTGC ATCCAACCGG CCCGATGTGG
GGGGAAGGCG CTTCACCTGC TGGCGGTGCG CCTGCGCAGC TGGAAAACGC TATCGGCGCA
CGTCAGCCGG CACTTTGCCA GTGGCTGGCC CAGGCGGGCA TGGATCACGA ACGGCGAATT
CTGCGGCTCC CTATTGGCGG CCTGACGTGG CATTATCCCG AGCCTGATAT CCTGCAACTG
GAATTCGTCC TGCCGGCCGG ATGCTTCGCC ACCGTGGTGG TGCGTGAAGT CGTGGATCTG
GTGTCGGCAG GGCAGACGGA CAGCCCATGC GTATTCTGA
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| Protein sequence | MTELELLGPR ASGEPLGTAI LKAVAEDFQV DEVLDIPLSG QGEHLWLWVE KRDLNTEEAA
RRLARAAGVP VRSISYAGLK DRQALTRQWF SLHLPGKADP DLSRAEDASL RVLKQVRHQR
KLQRGAHSAN GFTLRLTALA ADHQAVDARL EQLRQQGVPN YFGTQRFGHG GGNVHDALDW
AARKALPEQR NVRSRLLSAG RSYLFNQLLA ARVADGSWAR AQVGDLLAFT DSRSFFPAGE
AECADPRLAI LDLHPTGPMW GEGASPAGGA PAQLENAIGA RQPALCQWLA QAGMDHERRI
LRLPIGGLTW HYPEPDILQL EFVLPAGCFA TVVVREVVDL VSAGQTDSPC VF
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