| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1283 |
|---|
| Symbol | |
|---|
| ID | 1041703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1465629 |
|---|
| End bp | 1467302 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637144685 |
|---|
| Product | carbohydrate-binding and sugar hydrolysis |
|---|
| Protein accession | NP_743443 |
|---|
| Protein GI | 26988018 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.465255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGTGT ATTCAAGCCG GGCGACGCCT ACGGCAAGGA AACGGACTCG TACATGCACC
GCGCCTTCGT CGACGTCATC TGGCGCTTCT GAGGCCGGTA GGGGACTGAC CGTGATGAAC
CTTCACCCGC ACTTACGTCA CAGCCTGTTG GCCAGTGCCT TGCTGCTGGC AAGCGGCCTG
GCCACTGCCG CAGAGCCCCA GGTGATCGCC AAGGAGCTGC AGCAGGCCAA GACCTATACG
GTGGCCAGCG CACCGATCGA ACCGCTGCAG ATGGACCCGC CAAAGCTGCC CGACCTCACC
GGTTTCACGG CCGAGGCGGT GCAGAAGAAA ATCGACCGCC GCCACAAGGG CAAGGTCAGC
CTGCGCCGTA TGTTCCAGGA GGACACCCTC AAGGAGTTCG TCGGCGGCGA CAACAAGGCC
GCCGAGTGGG TGCAGCGCCA GCACGGCATT CCGCAGGCGA TCTTCGTCGA TGACGGCCAT
GTCGACCTGA CCGAGTTGAG CAAGAAGGTG CCCAAACAGT ACTTCAGCGA AGTCGAGCCA
GGGGTTTACC TGGCCCGCCT GCCGATCGTG GTCGGGCAAA AGGGCATCCT CGAGATCGAC
GGCAAGGTCA AACAGCTGCG CCTGTCCCAG GAGGGCGGCG CATTTCTGGT CAATGACGGC
AAGCTGTTCG TAACCGACAC CCAGGTGACC GGCTGGCGGG AAAAGGACAA CGGCCCGGCG
ACCTTCCGCT CGCCCAAGGA ATTCCGCCCG TTCCTGCTGT CGTGGGGCGG CACCGAGACC
TACATCGTCA ATACGAAGAT GGCCAGCTTC GGCTACGCCA AGTCCAAGTC GTATGGCGTG
AGCATCTCGC AGTACACGCC GAACATGGCC AAGCGCATGG GCCGCCCGGA GCCCACCGGC
TGGATCATCG GTTCGGAGTT CAGCGACATG TGGTACGGCT TCTACTGCTA CGAAACCCAG
GACTTCGTGA TCAAGGACAG TACCTACCGC GACAACATCG TCTACGGCAT CGACCCACAC
GACCGTTCGC ATCGCCTGAT CATCGCCGGC AACACGGTGT ACGGCACCAA GAAGAAGCAC
GGCATCATCG TTTCGCGTGA GGTCAACGAC AGCTGGATCA TCAACAACAA GAGCTACGAC
AACAAGCTCT CAGGCGTGGT GATCGACCGT AACAGCGTCA ACAACCTGGT GGCCTACAAC
GAGATCTACC GCAACCACAC CGACGGCATC ACCCTGTACG AAAGCGGCGA CAACCTGATC
TGGGGCAACA AGCTGGTCAA CAACCGCCGC CACGGCATCC GCGTGCGTAA CAGCGTGAAC
ATCCGCCTGT ACGAAAACGT CGCCATGGCC AACGGACTGG TCGGCGTATA CGGCCACATC
AAAGACCTGT CCGACACCGA CCGCGACATC GCCCTCGACC CGTTCGACAC CAAGGTGTCG
CTGATCGTGG TGGGTGGCGA GCTGTCGGCC AACGGCTCCG GCCCGCTGTC GATCGACTCG
CCGCTGTCGG TCGAGCTGTA CAAGGTGTCC ATGCTCGCCC CGCGCAAGGC CAGCGGCATC
AGCCTCAATG GTGTGCTGGG CGAGCGCCAG GACGAAATCC TCGACCTGCT GGTACGCCAG
CAGAAGGCTG TGCTGATCGA CCCGGTCGAA CGCCAGACCG AAATGATCGA TTAA
|
|---|
| Protein sequence | MPVYSSRATP TARKRTRTCT APSSTSSGAS EAGRGLTVMN LHPHLRHSLL ASALLLASGL
ATAAEPQVIA KELQQAKTYT VASAPIEPLQ MDPPKLPDLT GFTAEAVQKK IDRRHKGKVS
LRRMFQEDTL KEFVGGDNKA AEWVQRQHGI PQAIFVDDGH VDLTELSKKV PKQYFSEVEP
GVYLARLPIV VGQKGILEID GKVKQLRLSQ EGGAFLVNDG KLFVTDTQVT GWREKDNGPA
TFRSPKEFRP FLLSWGGTET YIVNTKMASF GYAKSKSYGV SISQYTPNMA KRMGRPEPTG
WIIGSEFSDM WYGFYCYETQ DFVIKDSTYR DNIVYGIDPH DRSHRLIIAG NTVYGTKKKH
GIIVSREVND SWIINNKSYD NKLSGVVIDR NSVNNLVAYN EIYRNHTDGI TLYESGDNLI
WGNKLVNNRR HGIRVRNSVN IRLYENVAMA NGLVGVYGHI KDLSDTDRDI ALDPFDTKVS
LIVVGGELSA NGSGPLSIDS PLSVELYKVS MLAPRKASGI SLNGVLGERQ DEILDLLVRQ
QKAVLIDPVE RQTEMID
|
|---|
| |