| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1237 |
|---|
| Symbol | dapA |
|---|
| ID | 1046257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1414726 |
|---|
| End bp | 1415613 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637144638 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | NP_743397 |
|---|
| Protein GI | 26987972 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.885534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCGG GCAGTATGGT GGCATTGGTC ACACCCATGG ATGCACAAGG GCGTGTTGAC
TGGGGCAGCC TCGACAAACT TGTAGACTTC CACCTGGAAA ACGGCACCCA TGCGATCGTC
GCTGTCGGCA CCACCGGTGA GTCGGCCACG CTGGATGTCG AAGAACACAT CCTGGTCATC
AAGCACGTGG TCGAGCGCGT CAAACGCAGC GCCAAACCGA TTCCGGTCAT CGCCGGCACC
GGTGCCAACT CCACCGCCGA AGCCGTGCAC CTGACCCAGA ACGCCAAGAA TGCTGGCGCC
GACGCCTGCC TGCTGGTTGT GCCGTACTAC AACAAGCCGA CGCAAGAAGG CCTGTACCAG
CACTTCAAGC ACATTGCCGA AGCCGTCGAC ATCCCGCAGA TCCTCTACAA CGTTCCCGGC
CGTACCTCCT GCGACATGCA GGCCGAGACC GTGATCCGCC TGTCGACCGT GCCGAACATC
ATCGGCATCA AGGAAGCCAC GGGCGACCTG GCCCGCGCCA AGGCCATTCT CGATGGCGTC
AGCAAGGACT TCATCGTCAT GTCCGGCGAC GACCCGACTG CCGTCGAGCT GATCCTGATG
GGCGGCAAGG GCAACATCTC CGTCACCGCC AACGTCGCTC CGCGCGAAAT GGCGGACCTG
TGCGAGGCCG CCCTTGAGGG CAATGCCGAG AAGGCCCGCG CAATCAACGA AAAACTCATG
CCGCTGCACA AGGACCTGTT CTGCGAGTCC AACCCGATCC CGGTGAAATG GGCGCTCGTC
GAAATGGGCC TGATGCAAAA AGGTATTCGC CTGCCACTGA CCTGGCTGAG CGAAGGCTGC
CACGAAAAAG TCCGTACTGC CTTGCGCCAG TCCGGCGTAC TGGTTTAA
|
|---|
| Protein sequence | MIAGSMVALV TPMDAQGRVD WGSLDKLVDF HLENGTHAIV AVGTTGESAT LDVEEHILVI
KHVVERVKRS AKPIPVIAGT GANSTAEAVH LTQNAKNAGA DACLLVVPYY NKPTQEGLYQ
HFKHIAEAVD IPQILYNVPG RTSCDMQAET VIRLSTVPNI IGIKEATGDL ARAKAILDGV
SKDFIVMSGD DPTAVELILM GGKGNISVTA NVAPREMADL CEAALEGNAE KARAINEKLM
PLHKDLFCES NPIPVKWALV EMGLMQKGIR LPLTWLSEGC HEKVRTALRQ SGVLV
|
|---|
| |