| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1163 |
|---|
| Symbol | |
|---|
| ID | 1045689 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1337283 |
|---|
| End bp | 1339319 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637144560 |
|---|
| Product | oxidoreductase, FAD-binding |
|---|
| Protein accession | NP_743323 |
|---|
| Protein GI | 26987898 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0633] Ferredoxin
[COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
[COG3576] Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.832333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0131556 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAT CTCCTGATCA CCGCCCCTCG CCCTGGCATG CGGGTGAAAA GACCCTGCAG
GAAAAGGTCG GTGTAGCAGA ACGCATGGAG GCGTTCGGGC AAAAGGTCAT TCGTGACCAC
ATGCCCGACC AGCACCGAAC GTTCTATCAC CAGTTACCGT TCATGGTCGC CGCCAGTGTG
GATGCCCAGG GTCGGCCTTG GGCCACGCTG CTGGAAGGGC CAGAAGGGTT CGTAAGCTCG
CCTGACCCTC GTATGCTGAC GATCCACACC ACGTTGCCAG CAGATGACCC CGCCACCCCC
GGGTTGGCAG CCGGGCAGGC GGTCGGCCTG CTGGGGATCG AACTGCACAC CCGTCGGCGC
AATCGCATCA ACGGGCAGAT CCGCCACGCT GCCCAAGGGC AACTGCAAGT GGCCGTAGAG
CAGGCGTTTG GCAACTGCCC GCAGTACATC CAGTTGCGTG ACTACACCCG CGTCACCGAA
CCCGCCCTCG GGCGCATCGA TGCGACAACA CTGGATACTT CAACCGTCAG CATGATCCAG
GCGGCCGATA CCTTCTTCGT CGCCAGCTAT GTCGAGCATG CTTACGGCCA GCGCTCGGTG
GATGTCTCCC ACCGTGGTGG CCGGCCAGGG TTCATCAAGG TCGAAGGCAA TCGGCTCACG
ATTCCCGACT ATGCTGGCAA TCTGCATTTC AACACCTTGG GCAACCTGGT GGTCAACCCG
CGGGCCGGCT TGCTGTTCAT CGACTTCAAA AATGGCAATG TGTTGCAACT GTACGGGCGT
GCCGAGGTGC TGCTGGACAG CCCGGCCATC CAGGCTTTTG AAGGCGCTGA GCGGTTATGG
ACACTGCAGG TCGAGAAGGT GGTGTGGCGT CCGGCAGCCG TTGCCCTGCG CTGGGCTTTC
AAGGAGTACG CGCCGACCAG TCTGATGACT GGTACCTGGG CCGAGGCCGA TGCGCGCCTG
GAGCAGCGGC AACAACAGCG CCAATGGCTG GCCTGGCGGG TGCTGCGGGT GGAGCAGGAA
AGCCGCGACA TCCGCTCGTT CTATCTCGAA CCACCGGCAG GCTGCCGTGT GGCCTTTGCC
CCTGGCCAGC ATCTGCCTGT GCAAGTGCCG CGTGATGGCG AGTCAGCGCT GATCCGCACC
TACAGCCTTT CAAGTGCCCC CGACGATGGA TTCTTGCGCA TCAGCGTCAA AGCCCAGGGC
CCGGCTTCGC GGTATCTGCA TGAGCGCGTT GTGGCCGGCG ATGTGCTGAA TGTGCGCCCG
CCGATGGGCA GCTTCACGCT TGACCAGCAA AGCACGCGCC CGTTGGTGCT GATCGGCGCG
GGCGTGGGCA TCACGCCGTT GCTGGCCATG CTGCGCCAGC AGTTGAGGAC AGGGCAGGCC
CGGCGCATTC ATCTGTTCCA TGGCGCACGC AGCCTGGCCG ACTTGCCGTT CCAGCAGGAA
CTGGCGGCCT TGCGGCAACA GGCTGGCGAT CTACTGCAGG TACACCGCGC ACTGAGCCAG
CCTGAAGGGC ACGCGCAGGT CGGTCGTGAT TACGAGTTTG CCGGCCGGTT GGGTATCGAA
CAGGTCAAGG CAACGCTGGC GTTGGACGAC TACGATTTCT ACCTGTGTGG CCCGGGCAGC
TTCACCCAGC AGCTTTACGA AGGGCTGCGT GGGGTGCATG TGCCGGATGC GCGGATTCAC
GCCGAAGCGT TTGGCCCGTC GACGCTGCGG CGGCACACCG ACGCAGACCA GCCAGTCCTG
CAACAGCCAC CTGCCGCTGA CGAACCGGTG CCGGTGTATT TTGCCGCGTC GGCCAAGGAG
GCTCGCTGGG TACCCGGTAG CGGCACCTTG CTGGAACTGG CCGAGGCGCG TGGGCTGGCC
CCGGAGTTCA GTTGCCGGGG TGGTTCGTGT GGTACCTGCA AGACCCGGCT GGTAAGCGGC
CAGGTGCATT ATCCGAATCC GCCGGCAGAG TTGCCGGAGG CAGGATCGGT GCTGATCTGT
TGTGCTGTGC CAGCGAAGGT GGAGGAGGGG ATGCAGGCGT TGGTGCTGGA TGTCTGA
|
|---|
| Protein sequence | MQQSPDHRPS PWHAGEKTLQ EKVGVAERME AFGQKVIRDH MPDQHRTFYH QLPFMVAASV
DAQGRPWATL LEGPEGFVSS PDPRMLTIHT TLPADDPATP GLAAGQAVGL LGIELHTRRR
NRINGQIRHA AQGQLQVAVE QAFGNCPQYI QLRDYTRVTE PALGRIDATT LDTSTVSMIQ
AADTFFVASY VEHAYGQRSV DVSHRGGRPG FIKVEGNRLT IPDYAGNLHF NTLGNLVVNP
RAGLLFIDFK NGNVLQLYGR AEVLLDSPAI QAFEGAERLW TLQVEKVVWR PAAVALRWAF
KEYAPTSLMT GTWAEADARL EQRQQQRQWL AWRVLRVEQE SRDIRSFYLE PPAGCRVAFA
PGQHLPVQVP RDGESALIRT YSLSSAPDDG FLRISVKAQG PASRYLHERV VAGDVLNVRP
PMGSFTLDQQ STRPLVLIGA GVGITPLLAM LRQQLRTGQA RRIHLFHGAR SLADLPFQQE
LAALRQQAGD LLQVHRALSQ PEGHAQVGRD YEFAGRLGIE QVKATLALDD YDFYLCGPGS
FTQQLYEGLR GVHVPDARIH AEAFGPSTLR RHTDADQPVL QQPPAADEPV PVYFAASAKE
ARWVPGSGTL LELAEARGLA PEFSCRGGSC GTCKTRLVSG QVHYPNPPAE LPEAGSVLIC
CAVPAKVEEG MQALVLDV
|
|---|
| |