| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1072 |
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| Symbol | |
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| ID | 1044672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1226819 |
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| End bp | 1231138 |
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| Gene Length | 4320 bp |
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| Protein Length | 1439 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637144467 |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | NP_743233 |
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| Protein GI | 26987808 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACCGC ACCGGCTCCC GAACGATTCC ATCGATAGCC TGATCGCCCA GAATTTGCCT
GGATGGCTAG TCGACCACGC CCAACCGGAA AGGCTCGATG CGTTACGTAA TGCCCTGAGT
CGCCAGGCGC ACTGCAATGC GCGGCTTGGC CCGATCCTCC AGGCCATCCC TTCTTTGCAG
GCCTACGCAG CAGCGTTGCT CAAAACGAAA CTGCGCAAGA GCGGCTTCAG CAACCCGGAC
GTGACGGGCT GGAGGGTACG GGTCTCGCAG CGGCTGTTGC TGCCCAGCGC TTCGCCTGTG
CTGCTGCGGC CCACCTATGT TCGCCGCTCC AGGCGGTCAT TGCTGGAGGC GGCGCTGCAT
AACTATCATC GCAGGGAGAC ACGCCCCGGG CTCACGCTCA AAGGTGAACT GGTCGATGGC
AACGGTAACC GCCTGCCGAT GAGCTTCCAC GCGTTTGCCT CCGCATGTCG CGAGGTCGAC
GCAGGGGGCA AGTACCAGGC GTTGCTCACC CACCATCTAC AGCCTGAAGA TGGCCCGGAG
GATGAGCCGG GCCAGGCCGT TTCCCGCTTG CACGGTCTTT TCGAGGCGAG TTTCAAGGCC
CATTTCGAGG TGGCGATGCG GGTCGCTGCG TTGAAACAGG ACATTGACGA GCGCACGTAT
TTTTTTCTGT TGCCACTTAT TGCCGATAAG CCGGTGGTGC CTGCGCTGGT GGGCACTGTG
GTGCCCCGAC AGTTGTACCT GCTGGGCCGC CCGGTTCAAG GCGTGCTGAC GCTGGAAGTG
CGTCCGTCAG CTGACGCAGT GGAGTCGGTG GTGCTCTGGA TACCCGATGA CCCTCATCAG
CCCGTCTCCC GTCATGCCAG CTGGGATGCA CTCGACAAGT ACCTCGGTAA GCGCTTCCGT
ACGCCGGCCT ATCGGCGCTT TTTCGCGCGC TTCATTACCG AGCGTGAGCG CATCAATTTC
TATCGGGTAT TGAACGAGCG GGTCGCGCAG GCATCGACAG CCGGGGTGGA ACTCGACGCC
CGTTCTGCAC CGATCACTGA CGCACCGTTC GTACACCTGC GTCGGCAATG CCTCGCCAAG
ATCAGGGATG ACGCCAGGGT GCTCGCCGTG CCCACCGATG TCGAAGATGA CGAAGACCGT
GAAGCGCGCA TGCAGGGCTA CAAAGAGCTG GGTTTGAATG TGCTGAACGT GGCGGGGGCG
TTCGTGCCTG TGCTTGGCGA AGTGCTGCTG GTGGCAAACG CGGTTCAGAT TGCTGACGAA
GTTTATGAAG GGTATGAAGA TTGGCGCATG GGTGACCGCG AAGGGGCGTT GAACCACCTG
TTCAACGTTG CCGCAAACGT CGTGGTCGGC GGGATGATCG CAGCTGGCAG CAAAGTGGCC
GTGCGTGCCC TTGAGCGTCT GGCCTTCGTG GATGACTTGG CACCGGTGTG CAACTCCGCA
GGCAAGGTCA GGCTCATGGC CACGGATCTG CCCGGTTACG ATGCCCAACC GTTGCGGGGT
GTCGGCGCAC AGGAATGGTT GTGGCACCTT GATGAGGGGC GTTATCGGGT GATGGAGGAT
CCGCAGGATG GTCGCTCCAG GATCCTGCAC CCTGGTCGTC CCAGTGCCTA TCGCCCTGTG
ATCGAGCAGA ATGGTGCCGG TGGCTGGCGC CATGAACTCG AAGCTCCACA GTACTGGGAA
GGGCGGGCCA ATCTGATACG CCGTTTGAGT ACGCCCCTGG CAGAGCTACC GGAACCGACA
TGTGACTACC TGCTCCAGGT GACAGGGCTG AGTGAAGCGC AGATTCGCCG TTTGCACGTC
GAGCACATGG GCGCACCTGC ACGGTTGCTC GATGCCCTGG AGCTTTATCA GGCACATGAA
TTACACCCGG ACTTCAGCGC GCCGCGACTG GCGCAGTACG TTGCTGATCG GCAAGTGCAG
CCCAATGGCA TCGAGCGGAT ACTGCGGCGC ACTTTCCCCG GCCTGTCGGC TCGCTGTACC
CGTGAGCTGC TTCAGCAATG CAGCGGTGCG CAGCTCGATA CGCTCAGCAA CGCGCAGCGG
ATCCCTTTGG CAGTGGCCGA GCGTGCACGA TGGTCGCTGC GCGAAAGCCG TCTGGACAGG
GCCTGTGCCG GTTTGCGCCT GCCGCGTTGC GTCAATCCGG ACACCGAACG CCTGGCTTTG
GGCTTGCTCG AGCGTCAGCT GAAATGGCCG GACACCCTGC GCATCGAACT GCGCGAAGGT
AGCCCGAGTG GCCGGTATCT GGCCGGTATC GGCGCAGAGT CTGCGCAGGA TGTACGGTGT
ATCGTGCGCC GCGGCGACGG CTATCGCTAC GCCGGTCAAG GTACATCCGG CCCCTACCTG
GCGGCACTGT TGGCTGCGCT GGACGAGACG CAGACAGCCG ATCTCGGCGA TGCCGCTGTC
AGTCCAGGCG CCCTGGGCTC GTTGCTGATC GAGGCCGCTG CCGGTGATCG TACCCAAGCG
GCTGAGCTCT GTGGCATGCC GCGTCTGGGC GTTGGCCTGC GACCCCCGAC CCGTTTCGGG
GATGGGCGTA TCGGGTATGC CTTGAGTGGG CGAGGCGAGA GCAGTCGGCG TGCCATAGGG
CGTGGTATTC ACCAAGTGTT TCCGACGATG ACAGACGGGG AGCTACAAGC CTATCTGCTT
GACCTCATGG AGCGGCGAGT AGGGTTGTGG GAGCACTACA GCCAGCTGAC GGGGCAGTTG
GCGCGCCTGC GTCAGAGCCT GCGCCAGTGG CGCAGGGATG CCAGTAACCC ACTGGACGCT
TTACGCCGCC GTCGGGTCGC TACTGCCGTA CGGCGAAGCT GGCGGCGCAA GATAACCGAC
GAGGCCGGGG ACTACGCGCT GATCATCAGC GGAGAGCGTA TCGGGAGTCT GCCCGAATTA
CCGGAGGGGG TGAGCTTTGA TCATGTGCGA CGGCTGATCC TCAGTGATCT GGGCCTTGGT
GAAATCAATG CGGACTTTCT TCGCCGTTTT CCCAACCTGA TTGAACTCGA CCTGTCCGGC
AATCGCCTGA CTGCGATCCC TCACGGCATT GAACATATGC CCCGCCTGCG GCAGCTGAAC
CTGCGCCGTA ACAGCGTGAT AATGGATGAG GCCGGTGAAT TGCGTCTTGC CGGGATGAGT
GCGCTGCGGT ACCTGGACCT CAGCCACAAC CCGTTGGGAA GGGCGCCGGT ACTGACGCGC
CTGGGCAATT TGCGTGAAGT CAACCTGCGC TCTGCTGGCC TTGAGGCGTT GCCTGAGCAG
ATCTCATTTC GTGCCCATGT GGACGTGCGT AACAACAACA TTCGCACACT GCGCCGAGAG
TTGCAGCAGC TGCGCCGGCA GGTGCACCAG TTGTCCTTGC ACGATAATCC ACTTGGCGAA
GCTGACGCAT TGCTGCTCGA TGAGGCACGA GGTGTGGCCC CGGGCCAGTG GGGGTCAGCG
TCCGCACGCC ATCGCGCCAT TGACAGTGAC CTGTTCAATA CCTGGGCCAA CAGCACAGCC
GACGCTGAAC GTGATCGCCA GCAGGCCATA TGGACAGCGC TGCTTGAGGA ACCGCACTCA
GATGGAATGT TCCGCTTTCT GGCAGACTTC GTCCACGGCG AGGACTTTGA ACAGCACCCT
GGGCATTACC GCAGCCGAAT CTGGCGAATT CTGGAAACGT GTGAGCAGCA CGAGCAGTTG
CGTCACCAGT TGTTTCTCGA GGCGTCTGGT CCACGCAGTT GTGAAGACCG CCTGCTGCTG
TTGCTGGAGC AGATGGAGCT TGGGGTTCTG GTGTTGCGCG CCGTCGAAGA CGCGCATGGC
AGTCGGATGG AAGCTCGCTT GCTAAGCCTG GCGCGTGGTT TGTTTCGCCT GGACGAGGTT
GACCGCCACG CGACGTTGCA CGTGCAACGC ATGCATGCCG AGCACGCCCC ACATATCGAT
GAAATTGAGA CAAGGCTGTT TTACCGACAG CGGCTTGCGC GTCCATTGGG CTTGCCGATC
GAGCTCGACG AAATGCACTA CCCAAGTTTT GCAAACGTGA CCACCAGCAA CCTGCTGCGG
GTCCAGGACG CGGTTTTACA AAATGAGTCG ACGGATGCCC TGATTGCCTC GCTGGCACAG
CGGCCTTTCT GGGAGCAATA CGCGCGCGAG TTTCATGCGC AGCGATTTGA AGACCTGGTA
CAGCCACTGC ACCAGCGTAT GGAGGCCCTG CAGGCTCAGG TAGATGAGCA AGTGATCAGC
GAAAACGAGT TTCTGCAACG CTGTGAAGCA CTGAAGGCTG ATTTCGATCG CAGCGAGCGG
GCATTGCTGG CGCGGTTGGC GCGTGAAGCC TACGAGCGCT GGGCGAATAC GCCCCCTTGA
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| Protein sequence | MSPHRLPNDS IDSLIAQNLP GWLVDHAQPE RLDALRNALS RQAHCNARLG PILQAIPSLQ
AYAAALLKTK LRKSGFSNPD VTGWRVRVSQ RLLLPSASPV LLRPTYVRRS RRSLLEAALH
NYHRRETRPG LTLKGELVDG NGNRLPMSFH AFASACREVD AGGKYQALLT HHLQPEDGPE
DEPGQAVSRL HGLFEASFKA HFEVAMRVAA LKQDIDERTY FFLLPLIADK PVVPALVGTV
VPRQLYLLGR PVQGVLTLEV RPSADAVESV VLWIPDDPHQ PVSRHASWDA LDKYLGKRFR
TPAYRRFFAR FITERERINF YRVLNERVAQ ASTAGVELDA RSAPITDAPF VHLRRQCLAK
IRDDARVLAV PTDVEDDEDR EARMQGYKEL GLNVLNVAGA FVPVLGEVLL VANAVQIADE
VYEGYEDWRM GDREGALNHL FNVAANVVVG GMIAAGSKVA VRALERLAFV DDLAPVCNSA
GKVRLMATDL PGYDAQPLRG VGAQEWLWHL DEGRYRVMED PQDGRSRILH PGRPSAYRPV
IEQNGAGGWR HELEAPQYWE GRANLIRRLS TPLAELPEPT CDYLLQVTGL SEAQIRRLHV
EHMGAPARLL DALELYQAHE LHPDFSAPRL AQYVADRQVQ PNGIERILRR TFPGLSARCT
RELLQQCSGA QLDTLSNAQR IPLAVAERAR WSLRESRLDR ACAGLRLPRC VNPDTERLAL
GLLERQLKWP DTLRIELREG SPSGRYLAGI GAESAQDVRC IVRRGDGYRY AGQGTSGPYL
AALLAALDET QTADLGDAAV SPGALGSLLI EAAAGDRTQA AELCGMPRLG VGLRPPTRFG
DGRIGYALSG RGESSRRAIG RGIHQVFPTM TDGELQAYLL DLMERRVGLW EHYSQLTGQL
ARLRQSLRQW RRDASNPLDA LRRRRVATAV RRSWRRKITD EAGDYALIIS GERIGSLPEL
PEGVSFDHVR RLILSDLGLG EINADFLRRF PNLIELDLSG NRLTAIPHGI EHMPRLRQLN
LRRNSVIMDE AGELRLAGMS ALRYLDLSHN PLGRAPVLTR LGNLREVNLR SAGLEALPEQ
ISFRAHVDVR NNNIRTLRRE LQQLRRQVHQ LSLHDNPLGE ADALLLDEAR GVAPGQWGSA
SARHRAIDSD LFNTWANSTA DAERDRQQAI WTALLEEPHS DGMFRFLADF VHGEDFEQHP
GHYRSRIWRI LETCEQHEQL RHQLFLEASG PRSCEDRLLL LLEQMELGVL VLRAVEDAHG
SRMEARLLSL ARGLFRLDEV DRHATLHVQR MHAEHAPHID EIETRLFYRQ RLARPLGLPI
ELDEMHYPSF ANVTTSNLLR VQDAVLQNES TDALIASLAQ RPFWEQYARE FHAQRFEDLV
QPLHQRMEAL QAQVDEQVIS ENEFLQRCEA LKADFDRSER ALLARLAREA YERWANTPP
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