| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1019 |
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| Symbol | oprB-1 |
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| ID | 1044055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 1162231 |
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| End bp | 1163574 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637144414 |
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| Product | porin B |
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| Protein accession | NP_743180 |
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| Protein GI | 26987755 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAGC GCAAACGCAT CAAGACACTG GGATCGTTGG CCTTGCTTGC ACTTGTAGGC
AGCAGCGGTA CACAGGCTGC CGAGGCTTTT TCCAGCGAAT CCAAATGGAT GACCGGCGAC
TGGGGCGGCA CCCGGACCGA GCTGCTGGAC AAGGGCTATG ACTTCACCCT CGATTATGTG
GGTGAGGTGG CTGGCAACCT GCATGGCGGC TACAACGACG ACAAGACGGC ACGCTACAGC
GACCAGTTCG CCCTCGGCGC GCATCTGGAC TTGCAGAAGA TACTGGGCTG GCATGATGCC
GAGTTCAAGC TGGCAATCAC CGAGCGAAGC GGTCGCAACC TGTCCAACGA CCGCATCAGC
GACCCGCGCG CCGGGCAGTT CAGCTCGGTG CAGGAGGTGT GGGGCCGTGG CCAGACCTGG
CGCCTGACCC AGATGTGGAT CAAGCAGAAG TACTTCGACG GCGCGCTGGA CGTGAAATTT
GGCCGTTTTG GCGAGGGCGA GGACTTCAAC AGCTTCCCTT GCGACTTCCA GAACCTGGCC
TTCTGCGGCT CGCAGGTGGG CAACTGGGTG GGCGGCATCT GGTACAACTG GCCGGTCAGC
CAGTGGGCGC TGCGGGTGAA GTACAACATC ACGCCGGAGT TCTTCGTACA GGTCGGGGCC
TTCGAGCAGA ACCCTTCCAA CCTGGAAACC GGCAACGGCT TCAAGCTCAG CGGCAGTGGT
ACCAAGGGGG CGATCTTGCC GGTGGAAGCG GTGTGGTCGC CCAAGGTCAA TGGCCTGCCG
GGCGAGTACC GCCTGGGTTA CTACTACAGC ACGGCCAAGG CTGACGATGT GTACGACGAC
GTCAACGGCA ACCCGCAGGC GCTGACAGGT GAAGCCTTCA AGTCGCACTC CAGCAAGCAC
GGATGGTGGG TGGTGGCGCA GCAGCAGGTC ACTGCCCATG GCGGCGACGT CAACCGGGGC
CTCAGCCTGT TCGCCAACTT CACCGTGCAC GACAAGGCCA CCAACGTGGT CGACAACTAC
CAGCAGGTGG GGCTGGTCTA CAAAGGCGCT TTCGACGCCC GGCCCAAGGA TGACATCGGC
TTCGGCGTGG CGCGTATTCA TGTGAATGAC GACGTGAAGA AGCGCGCCGA ACTGCTCAAC
GCACAGAGCG GCATCAACGA TTACGACAAC CCTGGTTTCG TGCCGCTGCA GCGTACCGAA
TACAACGCAG AGCTCTACTA CGGCTTCCAC GTTACCAACT GGCTGACCGT GAGGCCCAAC
CTGCAGTACA TCAAGAGCCC TGGCGGGGTG GACGAGGTGG ATAACGCGCT GGTCGCTGGC
TTGAAGATTC AGTCGTCATT CTGA
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| Protein sequence | MEQRKRIKTL GSLALLALVG SSGTQAAEAF SSESKWMTGD WGGTRTELLD KGYDFTLDYV
GEVAGNLHGG YNDDKTARYS DQFALGAHLD LQKILGWHDA EFKLAITERS GRNLSNDRIS
DPRAGQFSSV QEVWGRGQTW RLTQMWIKQK YFDGALDVKF GRFGEGEDFN SFPCDFQNLA
FCGSQVGNWV GGIWYNWPVS QWALRVKYNI TPEFFVQVGA FEQNPSNLET GNGFKLSGSG
TKGAILPVEA VWSPKVNGLP GEYRLGYYYS TAKADDVYDD VNGNPQALTG EAFKSHSSKH
GWWVVAQQQV TAHGGDVNRG LSLFANFTVH DKATNVVDNY QQVGLVYKGA FDARPKDDIG
FGVARIHVND DVKKRAELLN AQSGINDYDN PGFVPLQRTE YNAELYYGFH VTNWLTVRPN
LQYIKSPGGV DEVDNALVAG LKIQSSF
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