| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0878 |
|---|
| Symbol | dppF |
|---|
| ID | 1044759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1018090 |
|---|
| End bp | 1019058 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637144273 |
|---|
| Product | dipeptide transporter ATP-binding subunit |
|---|
| Protein accession | NP_743039 |
|---|
| Protein GI | 26987614 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTCG TTCTATCCGC CCGGGAGCTG ACCCGGCATT ACGAAGTCTC CCGCGGGCTG
TTCAAGGGCC ATGCGCTGGT GCGCGCGCTC AATGGCGTGT CGTTCGAACT GGAGGCCGGC
AAGACCCTGG CCGTGGTCGG CGAGTCGGGC TGCGGCAAGT CGACCCTGGC CCGCGCCCTG
ACCCTGATCG AAGAGCCGTC GTCCGGATCG CTGCAAATTG CCGGCACCGA GGTGAAGGGC
GCCAGCAAGG CAGAGCGCAA ACAACTGCGC CGCGATGTGC AGATGGTGTT CCAGAGCCCC
TACGCCTCGC TCAACCCACG GCAGAAGATC GGTGACCAAC TGGCCGAACC GCTGCTGATC
AACACCTCGC TGAGCAAGGC CGAGCGCCGC GACAAAGTGC AGAAGATGAT GGAGCAGGTC
GGCCTGCGCC CCGAGCACTA CCAGCGCTAC CCACACATGT TCTCCGGCGG CCAGCGCCAG
CGTATCGCCT TGGCCCGGGC GATGATGCTG CAACCCAAGG TGCTGGTGGC CGACGAACCG
ACCTCTGCGC TGGACGTGTC GATTCAGGCG CAGGTGCTGA ACCTGTTCAT GGATCTGCAG
AAGGAGTTCA ACACCGCCTA CGTGTTCATC TCGCACAACC TGGCGGTGGT GCGGCATGTG
GCGGATCAGG TACTGGTGAT GTACCTGGGG CGGCCGGCGG AGATGGGGCC GAAGGAGGAC
ATCTACGCGA AGCCGCTGCA CCCGTATACC CAGGCGCTGC TGTCGGCGAC ACCCGCGATT
CATCCAGACC CGTTGAAGCC GAAAATTCGT ATCGTCGGGG AGCTGCCCAA CCCGCTGAAC
CCGCCGGATG GGTGTGCGTT TCACAAACGC TGCCCGTATG CGACCGAGCG GTGTGCCAAG
GAGGTGCCGG CACTGAGGCA GGTGAGTACG CGGCAGGTTG CGTGCCACTA TGCGGAGCAG
TTTCTTTAA
|
|---|
| Protein sequence | MAVVLSAREL TRHYEVSRGL FKGHALVRAL NGVSFELEAG KTLAVVGESG CGKSTLARAL
TLIEEPSSGS LQIAGTEVKG ASKAERKQLR RDVQMVFQSP YASLNPRQKI GDQLAEPLLI
NTSLSKAERR DKVQKMMEQV GLRPEHYQRY PHMFSGGQRQ RIALARAMML QPKVLVADEP
TSALDVSIQA QVLNLFMDLQ KEFNTAYVFI SHNLAVVRHV ADQVLVMYLG RPAEMGPKED
IYAKPLHPYT QALLSATPAI HPDPLKPKIR IVGELPNPLN PPDGCAFHKR CPYATERCAK
EVPALRQVST RQVACHYAEQ FL
|
|---|
| |