| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU2028 |
|---|
| Symbol | |
|---|
| ID | 2688023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | - |
|---|
| Start bp | 2219965 |
|---|
| End bp | 2222649 |
|---|
| Gene Length | 2685 bp |
|---|
| Protein Length | 894 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637126719 |
|---|
| Product | type IV pilus biogenesis protein PilQ |
|---|
| Protein accession | NP_953077 |
|---|
| Protein GI | 39997126 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATCC AGACGACATT CTCCCGGAAA CTCGTCCTGA TGTCACTGCT GGCTGTGTTC
TGCGGATGCG CCGACGTTCA CTCCAGCGTG AAGGGCGACG CCATGGTCGA GCAGGCCAAG
GGGGGCGTCC TGCGTGAGAT CAAGGTGGCG GAAACAGGTG AGGGTGCCCG TGTCGTACTG
TCGGCCGACC GTCCCCTGGC CTACACGTTC TACAAAACGG CAGATCCGCC CAAGGCGGTC
ATCGATCTGG CCCGCACCGA ACCGGGCGCC ATTGCGTCGC CGATGGACGT GAACTCCGAT
ACCATCCGGC GTATCGAGAC CGTGCGGTAC GGTGAGGGTG CCACGGCCAT GACCCGTGTG
GAGGTATATT TCACACGCGA CACCGAGGCG AATGCGACCA TCGACGCCAG TGACAAAGGA
ATGCTTGTCC TTGCCGTGGC TCGTCCTGTC GCGCCCGCCG CCTCCGTTGC CGTTGAAGCC
GCACCGGCTG CCGGCCAGGC CGGCGAGAGC TCTACGGGTG CCCCGGTAGC AGTCGCTGCA
GCCCCGGCAG TAGCTCCGGC TCCCGTTGCC GTGGAGCCTC AGGCTCCGAT CGCTCCGGTT
GTTGCTCCGC AGACCGGCCC CCCGGTCATC AAGGCCATCG AAGCGCAGAA TGGTTACCTG
GTGATCGAAA CGAGCGGGGA GATCAAGGAC TTCAAGTTCT TCCGCCTTGC CAAGCCCGAC
CGGCTGGTGG TGGATATCTC GGACGCCAGG CTCGGCATCA ATTCCAAGGC TATTCCCCTG
AATGCCCTCG GTGTAGGGAT GGCCCGCATT GGTGCTTATC CCGATAAGGT CAGGATTGTT
CTCGATGCTG CGGGGGGGAC CCTCTCTCCT CTCAATGTAA CTAAAGGTGC AGCTGGCCTG
ATTGTTGCCC CGGCTGACAA GGTTGTTGAC GTACCTCGTG CTGCCGCCCC TCCGCAGCCG
TCCGCCTCGG CATCCCAGGC ACGGCAGCCG GAAGCGGTGA AGTCCGCCGA GCCGGCAAAG
GGCTTAACAC CCGCGGTTGA TGCCATTGAG TTCAAAGTAC TTGACGGGAC CTCACGTATC
ACTGTTGCCG TCACCGGCGC CTGTGCCAAC GACAAACCGG TCAAATCCGC CGACGGCTTC
AGCGTAACGC TTAGAAACTG CATCCTTCCC AAGAAGCTTC AGCGTCATCT CGATACGGGC
GCTTTTGCCA GTGTCGTTCA GAAGGTTACC CCCTACCAGG TGAAGACGAA GGGGCGCAGT
GACGTAAAGA TCCAAGTGCA ACTCCGCCAG CCCGCATCCT ACGATGTCAG GCGGGATGGG
GACCTGCTGC AGGTGAGCGT CCGGAACCCA GAAGGTTTTG AGCCCCCGGT CGCGGATGTG
CCTGCCTCCC CCACGCTTCA GGATGGCATG GATCAGGCCG CTGTCCGGCA GAAGGAACCC
TCCAGGGAGA CCGACCCGCT TGCCGGTGTC GCCCAGTCGG GTGGAACGAA GAAGGCGTAT
ACCGGGCGCC GCGTGACGCT TGAATTTTCC GATGCCGACA TCCGCAAGAT ATTCCAGCTG
ATTGCGGAGG TCAGCAATCT CAACTTCCTC GTGGGCGACG ACGTTACCGG CACCATCAGC
CTTAAACTGG TCAACGTTCC CTGGGACCAG GCCCTTGATG TCATTCTGGA GAACAAGGGG
CTGGGGATGC AGCGGGACGG CAATATCGTA CAGATTCGTC CCAAATCCAA GATCCAGACC
CTGGCTGACG AGGAGCAGGC GCTCAAGCGG GCCAAGGAAC GGGGCATGGA GCTGAAGACA
GAGGTCTTTG ACATCAACTT TGCGGCGGTG GGGGATATCG TGTCCCAGTT CAACGCCGTC
AAGAGCGAGC GGGGGACCAT CAGCCAGGAT GCGCGGACCA ACCGGGTAAT CGTGAAGGAT
ATCGAGCCGG CCCTGGCTGA AATGCGCATC CTGCTCAAGA ACCTTGATCT GCCTGAAAAG
CAGGTGCTCA TCGAAGCGCG CATTGTGGAA GCAACCTCCA CCTTCACTCG TGATCTAGGG
GTCCAGTGGG GCATACACAG CAACGATTCC GGCGCTGATA TTATCAGAAG CGTTGATGCC
GGATTCGGCG GGATCGTAAC GCCGCCGCCG GCCAGCGGCT TCCCTGCGGC AACATCATCC
GGCGGTGCTG TTGGGATCAG CTTTGCCAAA ATGGGGAGCT TGCAGGTTGA TCTGCGGTTG
TCGGCAGCAG CCGTTGCAGG CCTTGTTAAG ATCGTCTCGA CGCCCAAGGT TGTTACGCTT
AACAACAAAG CGGCGAAAAT TTCGCAAGGT CAGTCGATAC CGTATCAAAC CACATCAGCC
GAAGGAACCA AAACCGAGTT CGTGGAGGCG GCGCTGACAC TCGAAGTAAC GCCTCACATA
ACAGCGGACG GCAGCGTTTC CATGAAGATT AAGGCCTCAA ACAACTCAGC TGGCACCGGG
TCTCCGCCTC CGATTAACAA GAAGGAGGCA ACCACCGAAC TGTTGGTCAA GAACGGTGAA
ACCACCGTAA TTGGCGGTAT CTATGTAGAC AGCGATACTG ATGAAGACAG AGGGGTACCA
TTCCTGATGG ATATTCCGGT CCTTGGCTGG CTATTCAAGT CGAACACGAA GAACAAGACA
AAAACGGAAT TACTCATTTT CATAACGCCA AAAATTGTGA GCTGA
|
|---|
| Protein sequence | MRIQTTFSRK LVLMSLLAVF CGCADVHSSV KGDAMVEQAK GGVLREIKVA ETGEGARVVL
SADRPLAYTF YKTADPPKAV IDLARTEPGA IASPMDVNSD TIRRIETVRY GEGATAMTRV
EVYFTRDTEA NATIDASDKG MLVLAVARPV APAASVAVEA APAAGQAGES STGAPVAVAA
APAVAPAPVA VEPQAPIAPV VAPQTGPPVI KAIEAQNGYL VIETSGEIKD FKFFRLAKPD
RLVVDISDAR LGINSKAIPL NALGVGMARI GAYPDKVRIV LDAAGGTLSP LNVTKGAAGL
IVAPADKVVD VPRAAAPPQP SASASQARQP EAVKSAEPAK GLTPAVDAIE FKVLDGTSRI
TVAVTGACAN DKPVKSADGF SVTLRNCILP KKLQRHLDTG AFASVVQKVT PYQVKTKGRS
DVKIQVQLRQ PASYDVRRDG DLLQVSVRNP EGFEPPVADV PASPTLQDGM DQAAVRQKEP
SRETDPLAGV AQSGGTKKAY TGRRVTLEFS DADIRKIFQL IAEVSNLNFL VGDDVTGTIS
LKLVNVPWDQ ALDVILENKG LGMQRDGNIV QIRPKSKIQT LADEEQALKR AKERGMELKT
EVFDINFAAV GDIVSQFNAV KSERGTISQD ARTNRVIVKD IEPALAEMRI LLKNLDLPEK
QVLIEARIVE ATSTFTRDLG VQWGIHSNDS GADIIRSVDA GFGGIVTPPP ASGFPAATSS
GGAVGISFAK MGSLQVDLRL SAAAVAGLVK IVSTPKVVTL NNKAAKISQG QSIPYQTTSA
EGTKTEFVEA ALTLEVTPHI TADGSVSMKI KASNNSAGTG SPPPINKKEA TTELLVKNGE
TTVIGGIYVD SDTDEDRGVP FLMDIPVLGW LFKSNTKNKT KTELLIFITP KIVS
|
|---|
| |