| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1724 |
|---|
| Symbol | |
|---|
| ID | 2685333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 1888023 |
|---|
| End bp | 1889279 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637126404 |
|---|
| Product | nuclease SbcCD, D subunit, putative |
|---|
| Protein accession | NP_952774 |
|---|
| Protein GI | 39996823 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.559554 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGAT ACCGTTTTTT CCACACCGCC GACATCCACC TCGGCAAAAC CTACCGCACA
TCCACCGGTG AGGCTGAACG CTACGAAGAC TTCTTCCGCA TGCTCGGCAG CATTGTGTCC
GACGCCATTG CGGCAAGGGT CGATTTCGTT CTGATTGCTG GCGACCTCTT CCACACCGGG
CAGATTCTCC CCCGTACCTT CGCCCGGACC ATCGAGACAC TTCAGCCGCT CAAGAACGCC
GGCATCCCCT GCATTGCCGT GGAAGGGAAC CACGACTGGA TACACCGCCG CGACAGCATC
TCGTGGATGG AAGCGCTGTC GCAGATGGGT TATATCCACC TGCTGCGCCC CAGCCGTACT
GAGACCGGCG GCTACCGCTT CAGTCCCTTT GATTACGAAC AGGGCATGGG CGGCCACATC
GAGGTCAACG GAGTCAACAT CTACGGCCTC GGCTACATCG GCACCCAGGC GGGCGCCCAC
GTAGCGCGCA TCTGCGAGGC TATCACCACC ACGAATAACA TCCTCCTCTT CCATGTGGGT
GTCTGGACCT ACTCACCGGT TGAGATCGGC AACATGAAGC CGGAGGAGGC GCTCCCCCTG
GCCGATGTCT TCGACTACGT GGCCTTGGGC CACGGCCACA AGCCCTACAT CATCGCCACC
CCGGAAGGCC GCGCTTACGC CTTCAATCCC GGCTCCCCCG AATGCGTCAA CTTTGGCGAG
GAAAAGTACG ACAAGGGGTA TTACCTCGTT ACTGTCAATG ACGGAGTCTA TACCCATGAG
TTTCGGCCGA CCAATCCCCG CCCCATGCTG GTGACCACCA TTGACCTGGA TGGCGCCGGA
GATGCGGAAA CGGCTCTGAC GCGGTTCCGC AACGTGGTTG CCGCAAAGAT CGCATCGTTC
AGCGATGACC GTCAGCCGCT CCTGGAGATC AAGCTCACCG GCCGGGTCGG CTTCCACCCC
TTTGAGCTGG GGCGGGAACG GCTTCGCCTG GCCCTTGAGG AGATCTGCAA CCCTCTCCAT
GTGGAGATCA AGAACCACCT CTCCCTGGTC ACTGCCGGGG GGGGCGCAGA ATCCGAAAAG
AAGAGCCTCG CCGAGATCGA GCGGGAGGTG CTCAGGGAGT TGATATCCGC CAAGAGCGAG
TACAAGGGGC GGGAGGATGA ACTGGTGCGG CTCTCCCTGG CGATCCGCGA CCAGGTGCTC
AAGGGGGAGA CGGACGGCGA AGAGTTGCTG GGACTTCTGA TGCGGGAGCC TGCCTGA
|
|---|
| Protein sequence | MTRYRFFHTA DIHLGKTYRT STGEAERYED FFRMLGSIVS DAIAARVDFV LIAGDLFHTG
QILPRTFART IETLQPLKNA GIPCIAVEGN HDWIHRRDSI SWMEALSQMG YIHLLRPSRT
ETGGYRFSPF DYEQGMGGHI EVNGVNIYGL GYIGTQAGAH VARICEAITT TNNILLFHVG
VWTYSPVEIG NMKPEEALPL ADVFDYVALG HGHKPYIIAT PEGRAYAFNP GSPECVNFGE
EKYDKGYYLV TVNDGVYTHE FRPTNPRPML VTTIDLDGAG DAETALTRFR NVVAAKIASF
SDDRQPLLEI KLTGRVGFHP FELGRERLRL ALEEICNPLH VEIKNHLSLV TAGGGAESEK
KSLAEIEREV LRELISAKSE YKGREDELVR LSLAIRDQVL KGETDGEELL GLLMREPA
|
|---|
| |