| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1296 |
|---|
| Symbol | |
|---|
| ID | 2686518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 1414746 |
|---|
| End bp | 1416926 |
|---|
| Gene Length | 2181 bp |
|---|
| Protein Length | 726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637125970 |
|---|
| Product | sensory box histidine kinase/response regulator |
|---|
| Protein accession | NP_952349 |
|---|
| Protein GI | 39996398 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00691779 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACAG CAACTCTTCC ACATACTGTC GGTAAACGAT TGTTCCGCCA GACCCTTCTG
CTGGCCCTGG CCCTCAGTGT CGTGTTTTCG GCTGTTTTCA CGGTCGTCGA ATACTACCGC
AGTAAGGTTT CCCTTAACGA GTCCGTTGAG CTTCTGAAAA AGACCCACCT GGATGCCATA
ACCGCCGCTC TCTGGAGCCT CGACCGCCAA CAGATCGCGG CCCAGATCGA CGGAATACAC
CACTATCCTT TCATCAGCTA CGTGGCCGTG GTCGATCAGG GCGGGGTCGT CGTAGAATCC
GGCACCAGAA GCGAACTGTT CGGCGATGTC CGCAGAATAG ATCTCACTGC GACCTACAAC
GGACGTCAGG TGTCCCTGGG GTCCCTCTAC CTGGAGATCG ACCGCCAGGC CATCATGCGC
GATGCCCTGT CCACCGCGGC CGTAACCCTG CTGTTCCAGA CCCTGACCAT TACCATCGTG
ATGCTGTTCA CCTTCATGCT TTTCGAGCGC CAGGTAACCC GCCATCTGGC TGCTGCTGCG
GACTACTTCA CCTCCTTCGG TTTCGCCCGG GTGCAGCAGC CGCTCCAGTT GGACAAGCAC
CGGTACGGGG ACGAGATCGA CGCGCTGGTG GAGGCGTTCA ACAGGATGCG GGAATCCCTG
GCCGTTGCCT ATCAGCAGCA GCAGGGGATG CTCCAGGCGG TGCGCGAGAG CGAGGCGTTG
CTGCGGGCAA TTGCCCGCAG GATACCGAAC GGCGGAGTGT GGGTGGTGGA CACTGATGGT
CGCTATATTA TGTTCGAGGG GAGCCTCGTT GAGTCCCTCG GCCTGAGCGG TCAGGAGGCG
TTGGGGCGCA TGCCGGGCGA CCTGTTCGGA GAGCCGCTTG CCGACCGGCT GGTGGGCTGT
TATCGCCTGG CGCTTGCCGG GGGAACCCTG AGCGAGGAAA TCGAGTACCG GGAACGGGTG
CTGTGGATCC AGTTCGCCCC TCTTGAGGAC GAACACGGCG CAGTGATGGC CGCCGTGGCC
CTCGGTATTG ATGTGACCGA ACGGCGCCAA GCCGAGGCGG AGCGGCGGGA GATGCTGCAG
CGGCTGGGCC AGGCCCACAA GATGGAGGCA GTTGGCCGGC TTGCCGGGGG TATCGCCCAC
GACTACAACA ACAAGCTCAC GGTGATTCTC GGCTACGCCC ACGTGCTCAA GCTCACCGGC
TTCCAGAGCA AGGAGGCCCC CGAACAGCTC GATCAGATCA TCAGGGCGGC TGAGCATTCC
CGCGACATCA CCCGCCAACT GCTGGCGTTT ACCCGTAGTG AGCGGGTTAA TCCCGTCAGG
GTCGATCTGA ACCGGCTCAT CTCCCAGAGC AGCAAATCCC TGACCCGTCT GATCGGAGAG
GACATAACCC TCAGCCATGT GGCCGGCGCA GATCTGTGGC CGGTGCGGAT CGATCCGACC
CAGGCCGATC AACTCCTCAT GAACCTGGTG ATGAACGCCC GCGACGCCAT AGCGGGCACC
GGCAGTGTCA CCATCGCGAC CTCGAATGTC GTGCTTGACA GGGCAACGGT CAGGCATCTG
CAAGGCGCGT CGCCTGGAGA ATACGTTCTG ATGACGGTAA GTGATACGGG TTGCGGCATG
GACCCCGAGG TGATGGAACA TATCTTCGAG CCATTTTACA CGACTAAGGA AATGGGAAAA
GGAACCGGCC TCGGACTCGC CACGGTTTAC GGGATTGTGC GTCAGAACGG CGGTGCCATC
AGCGTTGAGA GCGAGCCCGG CGGGGGATCG GTCTTTTCCA TCTATTTGCC GCGCTTTGTG
GGTGAGTCGC ACGATGTTCG CCGGCTCGGC GAGGTCGACG AAACTCTCCC CGCCAGGACC
ACGCTTCTGG TGGATGACGA CGACGCCGTG CGGGATATCA CCGCACTGAT GTTGCGGCGG
CTCGGTCATA CCGTCATAAC CGCATCCGAT CCCGACGAGG CAATCCACCT CTGTCAGCAG
CCCGGCATAG TCGTCGATTT GATCCTCACC GATGTCATCA TGCCGTCCAT GAACGGCCGG
GAGATGGTCC GGTCTATCCT GTCCCACCAG AAAGCGGCCA AAGTTCTCTA TATGTCCGGC
TACCCGGCGG ACGTCGTAGA AGGGCGAGGC GCGGTCGACG CCGATGCGCG TCTCCTTAGC
AGGCTGTTGA AATTGAAATA G
|
|---|
| Protein sequence | MSTATLPHTV GKRLFRQTLL LALALSVVFS AVFTVVEYYR SKVSLNESVE LLKKTHLDAI
TAALWSLDRQ QIAAQIDGIH HYPFISYVAV VDQGGVVVES GTRSELFGDV RRIDLTATYN
GRQVSLGSLY LEIDRQAIMR DALSTAAVTL LFQTLTITIV MLFTFMLFER QVTRHLAAAA
DYFTSFGFAR VQQPLQLDKH RYGDEIDALV EAFNRMRESL AVAYQQQQGM LQAVRESEAL
LRAIARRIPN GGVWVVDTDG RYIMFEGSLV ESLGLSGQEA LGRMPGDLFG EPLADRLVGC
YRLALAGGTL SEEIEYRERV LWIQFAPLED EHGAVMAAVA LGIDVTERRQ AEAERREMLQ
RLGQAHKMEA VGRLAGGIAH DYNNKLTVIL GYAHVLKLTG FQSKEAPEQL DQIIRAAEHS
RDITRQLLAF TRSERVNPVR VDLNRLISQS SKSLTRLIGE DITLSHVAGA DLWPVRIDPT
QADQLLMNLV MNARDAIAGT GSVTIATSNV VLDRATVRHL QGASPGEYVL MTVSDTGCGM
DPEVMEHIFE PFYTTKEMGK GTGLGLATVY GIVRQNGGAI SVESEPGGGS VFSIYLPRFV
GESHDVRRLG EVDETLPART TLLVDDDDAV RDITALMLRR LGHTVITASD PDEAIHLCQQ
PGIVVDLILT DVIMPSMNGR EMVRSILSHQ KAAKVLYMSG YPADVVEGRG AVDADARLLS
RLLKLK
|
|---|
| |