| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1188 |
|---|
| Symbol | |
|---|
| ID | 2686772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 1294073 |
|---|
| End bp | 1294618 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637125862 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | NP_952241 |
|---|
| Protein GI | 39996290 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0257893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTCCCCA TCGACCGGTT CGGCCGGTTC TGGACGCTCC TGTCGGCTAA CTACCTCCAC
GGCGGCCTGC TGCACATCTT CTTCAACATG ATGGCCCTGC GGCAGATTGC TCCGCTGGTG
GCGCGCGAAT ACGGTACCTG GCGAATGTTT TCCATCTATA CCCTCGGCGG GGTGGCCGGC
TATGTAGTTT CCTATCTGGC CGGCACCGGT TACACCATCG GCGCATCGTG CGCCATCTGT
GCACTGATCG GTTCGCTTCT CTACTACGGC AAGAGCAGGG GGGGGCTCTA CGGCCAGGCG
GTTTTCAAGG AGGTCTGGGG ATGGGTGGTC GGTCTCTTCC TGTTCGGGCT GATCGTGCCG
GGGATCGACA ACTGGGGGCA CGGGGGGGGG ATCCTGGGGG GGATCATCAT GGCCTTCATT
CTCGGCTATC GCGAGCGGCG CAGCGACAAT CTCTTTCACA CCTTCCTGGC AGGTGCCTGC
GCCCTGGCCA CGGCCGTATC GCTTCTACTC GGTTTTCTGA GCGTCTACTA CACCTTCAGA
GGGTGA
|
|---|
| Protein sequence | MVPIDRFGRF WTLLSANYLH GGLLHIFFNM MALRQIAPLV AREYGTWRMF SIYTLGGVAG
YVVSYLAGTG YTIGASCAIC ALIGSLLYYG KSRGGLYGQA VFKEVWGWVV GLFLFGLIVP
GIDNWGHGGG ILGGIIMAFI LGYRERRSDN LFHTFLAGAC ALATAVSLLL GFLSVYYTFR
G
|
|---|
| |