| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU0689 |
|---|
| Symbol | |
|---|
| ID | 2687025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 727698 |
|---|
| End bp | 730397 |
|---|
| Gene Length | 2700 bp |
|---|
| Protein Length | 899 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637125361 |
|---|
| Product | SecD/SecF family protein export membrane protein |
|---|
| Protein accession | NP_951746 |
|---|
| Protein GI | 39995795 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1033] Predicted exporters of the RND superfamily |
|---|
| TIGRFAM ID | [TIGR03480] hopanoid biosynthesis associated RND transporter like protein HpnN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0944468 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCACA CAAACGACAG AAAACGGTTT ACGGGACTTT TCGGCGTCGT CGCCCGCCAT
CCGCGCCTCG TTCTCGGGGT GTCACTCCTG CTGGCAGTGC TTTCGGTGCT CTATACCTGG
CAGGAGATGA GCTTCCTGAC CGGCCGCGAC GACCTGATGC CGAAAAATGC GCCGTTCCAG
CAGGACTACC GGGCAAACCG GGCGGAATTC GGCGACCGCG AAGAGATCGT CGTGGTGGTC
GAGAGCGGCG ATCAGGCCAG GGCATCGGGC TTTGCCGAAC GCCTGGCCGC GGACCTCTCG
GCCGATCGGA CGCGCTTTCG CGATGTCTTT CACCCCAACG GTCTTCCGTT TTTCCGGGAG
CACGGCCTGT TGCTCCTTCC CCTGGACGAG CTGCGGTCGC TCCGAGAAAA CCTTACCCTG
GCCGAGCCGG TGCTGAAGGA TCTCGCCTCA ACGCCGTCGG TCCAGACCCT CTTTACCCAT
CTTACCACAC GCATGGACGT TTACACGGCG GCGGACGATT CTTCCGCCGG CCGCGACCGG
GAACGGGCGG GACTCGTCTT TATGCTCGAC AAGCTGGGCA GCGGCATTGC CTCCTTTGGC
GGCGGCAAGG GCTCCTTTTC CCTTGAAGAG GTCTTCCTCG GTGGGGACTC GGCTCTGGCC
CGGGCCCAGC GGATGCAGAT AGTGACGGTC AGGCCGGTGC GCGACGCTGC CAGTTTTGTT
CCGGCCGAGG AGGCGATCCG CGTGGTCCGC GCCCGGGTGG CTGAGCTCAA GGCACGTCCC
GAGTTCGCCG GCGTGACCGT TGGGCTCACC GGCACGCCGG TTCTGGAGTA CGAGGAGATG
GCAACCAGCG AGCGGGACAT CACCCTGGCA ACGGGTCTCT CCCTGGCCCT GACCGTGGTC
CTCCTGCTGG CGGCCTTCCG GGGGGTGCTG AACGTGGCGG CCGCCATGGT TTCCCTGGTG
GTGGCCATCT GCGTCTCCTT CGGCGTGGCG ACCCTGGTGG TCGGGCACCT GAACATCCTT
TCCATGGTCT TTGCGGTCAT GCTGATCGGC ATCGGCATCG AGTACGGCAT CCAGGTGGTG
CTCCGCTACC AGGAAGAGCT GGGGCTCGGG GCCGGTGAAC TGGAGGCCGT GAACACGGGG
CTCAGCCGGA ACATGCTCGC CATTGTCATG GCCGCCGCCA CCACGGCAGC GGCGTTTTTC
ACCTTCGCCT TCACCGATTT CCGGGGAATT GCCGAGCTGG GGATCATCGC CTCCCTCGGC
ATTGCCGTCT GCGTGGCCGT TACCTTCACC ACCCTGCCCG CGGCCCTGGT CCTTCTCGTG
CCGCTGCGCA AAACGAGGGA GACCGAGCGA GAAGCCCGGG CCGCCGGCCT GCTGAGGCGC
TCACCCCGGT TCGCACGGCT GGAGGCGTTT CTCTTCGGCC ATCCGCGGAT CGTCGTGGGG
ATCACTGTTC TGCTCTGCCT CGCTTCGCTC TATCCGCTGG CCGATACCCG CTTCGACTAC
AATCTCCTTA ACCTGCAGGC CCGGGGGCTC GAGTCGGTGG AGTATGCCTA CAAGCTGATG
AAAAGCAGGG AGAATGCGGG CTACTTCGCC GAAGTGACCG CTGCGACGCC GGCCGAGGCC
AGGATGCTCA CGGCCCGCCT GGAGCAGTTG CCGACGGTCG ACCACGTGGT GAGCCTCCTT
ACGTTCGTCC CCGACGATCA GGATGCCAAG CTCCGGGAAC TGGCCGTGCT GCGGGATGAA
CTGGCCGATG TGAACCCGGT TCCCTACGAG GAGGATCTGC GGGTCATGGA ACTCCCCACG
GTGTTCGAGA ATTTCCGTAC CTCCGTGGAG CGGTTCAAGG TGCGGCTCGA GGCGGAGAAG
AGGCCCGAGG CTGTTCGGGT GGGGGCCTTC CTCGCCACCC TTGATCGTTT CTTCGCTGAC
CTTGAGAAAG AAAAGGACCG CAATGCCCTC GGCATGCTCC GGGATTTCCA GGGGGGGATG
CTCGCCTCGT TCCCGGAACA GATCCAGCAG CTCAAGGCAA GCCTCGCAGT CCGTCCGGTA
ACCGAGGCGG ACGTGCCTCA GCAGCTCAGG GAGCGCTTCG TGGGGAAAAG CGGCACGTAT
CTGCTCCAGG TGGCGCCCCG GCAGGAGATT TTCGAGCGCG AGCCACTGAA GCGGTTCCTG
GACCAGGTTC GCAGCGTGGC GCCCCGGGCC AACGGCGAGC CGGTTATGGT CTACGAATCC
ATGACCATCA TGCGCGACGC CTACTTGCGG GCGTTCGTCT ACGCCTTCGG TGCAATCGTG
CTGATCCTGT TCATTACCTT CCGCAGTCTA GTCTATACCC TGGTGGGGCT CGTGCCGCTG
GTGGTGGGAA TGCTCCTCAT GGTGGGGGGG ATGTGGCTGG CCGGCATTCC CTTCAACTCT
GCCAATATCA TCGTGCTGCC GCTTATCCTC GGCATTGCCG TGGATTCGGG GATCTACATC
ATCAACCGCT TCCGCCGGGA AGAGGGGGAC GCTGCCTCGG TCATCATGAG CAGCACCGGC
CTGGGCGTCA TCTACAATAC ACTCACCATC ATGGCGAGCT TCGGCGCGCT CATGGTGGCC
CGCCACCAAG GGGTCTTCAG CATCGGGGCG GTCATGAGCC TGGGCATGGT GGCCTGCCAG
GCCGCGTTCA TCCTGGTGCT GCCGGCGGTG TTGACGCTGG TGGGGAAGCG TAGTGACTAG
|
|---|
| Protein sequence | MQHTNDRKRF TGLFGVVARH PRLVLGVSLL LAVLSVLYTW QEMSFLTGRD DLMPKNAPFQ
QDYRANRAEF GDREEIVVVV ESGDQARASG FAERLAADLS ADRTRFRDVF HPNGLPFFRE
HGLLLLPLDE LRSLRENLTL AEPVLKDLAS TPSVQTLFTH LTTRMDVYTA ADDSSAGRDR
ERAGLVFMLD KLGSGIASFG GGKGSFSLEE VFLGGDSALA RAQRMQIVTV RPVRDAASFV
PAEEAIRVVR ARVAELKARP EFAGVTVGLT GTPVLEYEEM ATSERDITLA TGLSLALTVV
LLLAAFRGVL NVAAAMVSLV VAICVSFGVA TLVVGHLNIL SMVFAVMLIG IGIEYGIQVV
LRYQEELGLG AGELEAVNTG LSRNMLAIVM AAATTAAAFF TFAFTDFRGI AELGIIASLG
IAVCVAVTFT TLPAALVLLV PLRKTRETER EARAAGLLRR SPRFARLEAF LFGHPRIVVG
ITVLLCLASL YPLADTRFDY NLLNLQARGL ESVEYAYKLM KSRENAGYFA EVTAATPAEA
RMLTARLEQL PTVDHVVSLL TFVPDDQDAK LRELAVLRDE LADVNPVPYE EDLRVMELPT
VFENFRTSVE RFKVRLEAEK RPEAVRVGAF LATLDRFFAD LEKEKDRNAL GMLRDFQGGM
LASFPEQIQQ LKASLAVRPV TEADVPQQLR ERFVGKSGTY LLQVAPRQEI FEREPLKRFL
DQVRSVAPRA NGEPVMVYES MTIMRDAYLR AFVYAFGAIV LILFITFRSL VYTLVGLVPL
VVGMLLMVGG MWLAGIPFNS ANIIVLPLIL GIAVDSGIYI INRFRREEGD AASVIMSSTG
LGVIYNTLTI MASFGALMVA RHQGVFSIGA VMSLGMVACQ AAFILVLPAV LTLVGKRSD
|
|---|
| |