Gene Ssol_0494 details

Gene Information

• Locus tag: Ssol_0494
• ID: 0
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sulfolobus solfataricus 98/2
• Kingdom: Archaea
• Replicon accession: CP001800
• Strand: -
• Start bp: 443178
• End bp: 445154
• Gene Length: 1977 bp
• Protein Length: 658 aa
• Translation table: 11
• GC content: 34%
• Product: Type II secretion system F domain protein
• Protein accession: ACX90773
• Protein GI: 261601170

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACTGAGA GAAGAGTTAA ATTAGCTAGT ATAATCTCAT ACGATTTCTT ATTTCTAGTT 
TTACTATCAG GCTTACTAAA CTTAATTATT ACAATATTTA GAGAACGTCT CCTATATGTG 
CTTTCTAGTT TTTTCCAATA TATCGTGAGT AACCCTTCGG TAGCACTTGG GGATGCGTTG 
GGTTTTATAT TCGTTCTTCA AGCATTACTT CTAGGCCTAT TTATTGGAGG AATAGTTATT 
TTAAGTATAA GCTTTACAAT AAATTTGACG CGAATAAGGA GTGAATATGA AGAGGGCGTT 
CCATTATCAA CCATTCTAAG GTCTAGGATA ATTACAAGTA GTAGATTAGG TATCATAGCA 
AATTGGATAA GTGAGCGTAG TAAGAGATAT ATTAACGCGA GTGCTGATTT GGAAAGTCCT 
ACTGAGGTTG GCGTTAGATA CGTTGCATAT TTTTTAGTCT CATTACTTGT CGTAATACCG 
GTATCATTAG CACTTAGTAT AGCATTACTC TCTCCTCTAC CATTTCTATT AATATTTTTT 
CCGTTAACTT TTATCTTTTA TCCAGAACAG AAATACAAGA GTAGGGCTAG AGAAATAAGA 
GACGATATTC AAGATGAGAT ACCTTTCTTT GTGACTCTAA TCACTATCAT TAATGCAAGT 
GGTACAACCA TATATGAGGG AATGAGAAAA ATTTTACAAT TTCCAATATT TAAAGCTATG 
AAAAAGGAGG CATTACTCAT TATAAGGGAT ATAGAATTCT TTGGAAAATC CCCGCTAGAT 
GCTCTGGAGC ATAGATCTCG ATTAACACTA AATAGAGATT ACTCTTGGTT TTTAGCTGGC 
TATTCTTCGA TCATAAGAAG TGGTGGCGAT ATTGAAGCAT ATTTGTTCCA AAAGGCTAGA 
GAGTTTCTCA ATTGGCTCCA ATTCCGTTGG AGGTTTTACT CTGAAAGGAC TTCGTTCCTA 
GGAGAGTTAA TAGTGATCTT ATTCCTTATT TTCCCCATGT TCTTAATTGC ATTAGCCTTC 
TTCACAAGTG GTGCAGTTAT ATCATTTTTG CTCATAATAC CTATATTATT TGGTACAATA 
TTATATACAA TTACAGCTAA TAATAGACCT AGATATATGG ATAGTATAGG TCTCACCAAG 
TTACAGTTAC TAATAGGATT TATCGCTGCA TTATTAACAG CAGGGGTAAT CGAAATATTT 
CTTGATGAAA TATATTACGC AATTGGTTTA GGGCTCTTAT CGTTCTCTCT AGCATCAACA 
ATATTCATGT ATAACCAAAT AAGAGAAATT AACGATGTTG AAAACTCGTT ACCGCAATTT 
CTAAGAGATA TTACAGAGTT CAGAAAGATA GGTTACGATC TAAGTAGGGC TATTAAGACA 
TTGGCCGAGG AAAAGAGATA TAGAAGGGAG TTTAATAGGG TACTAAATGA AATAACAAAA 
CAAGATTCCA TGGGGATTCC AATAACTAGA GCTAAGATAA ATACTAGAAG CTGGTTGGGT 
AAGTTCTCTC TTACCACTGT CCAGATACTA ATAGAAAGCG GTGCTGTAAG ACCAGATCTA 
CTGGAGTATT TAACTGAATT TACACTTAAT TTTATACAAT CAAAGAAGGA GGCATTCTCA 
AGAATGAGAG CTTATCAAGT TTTAGGAATT CTAACACCAC TCCTTCTAAT AGCTACAATA 
CTTATAGCTA TTGTGATTAT TGACTCATTC ACAATAGTAA CTTTACCGAC AAATACCGTA 
GGTTTACCAC AATTCCCAAA CATCATTAGT CAATTTATTT TATCTCCGGT GATACTTGCT 
GAAATGTTCA TATTCATTTT AATGTCAACT TTTGCCATAG GATTACTGGT AACTAAAGCA 
CTATATGGCA CTGTACAATA CATGATAATG CCAGCAATTG GATTAACCCT AGCAGTGCTC 
TCAATACACT TCTTCAGCGT AATAGAACCG ATAATCTTGA AATTCTTCTC GATATAA 

 

Protein sequence

MTERRVKLAS IISYDFLFLV LLSGLLNLII TIFRERLLYV LSSFFQYIVS NPSVALGDAL 
GFIFVLQALL LGLFIGGIVI LSISFTINLT RIRSEYEEGV PLSTILRSRI ITSSRLGIIA 
NWISERSKRY INASADLESP TEVGVRYVAY FLVSLLVVIP VSLALSIALL SPLPFLLIFF 
PLTFIFYPEQ KYKSRAREIR DDIQDEIPFF VTLITIINAS GTTIYEGMRK ILQFPIFKAM 
KKEALLIIRD IEFFGKSPLD ALEHRSRLTL NRDYSWFLAG YSSIIRSGGD IEAYLFQKAR 
EFLNWLQFRW RFYSERTSFL GELIVILFLI FPMFLIALAF FTSGAVISFL LIIPILFGTI 
LYTITANNRP RYMDSIGLTK LQLLIGFIAA LLTAGVIEIF LDEIYYAIGL GLLSFSLAST 
IFMYNQIREI NDVENSLPQF LRDITEFRKI GYDLSRAIKT LAEEKRYRRE FNRVLNEITK 
QDSMGIPITR AKINTRSWLG KFSLTTVQIL IESGAVRPDL LEYLTEFTLN FIQSKKEAFS 
RMRAYQVLGI LTPLLLIATI LIAIVIIDSF TIVTLPTNTV GLPQFPNIIS QFILSPVILA 
EMFIFILMST FAIGLLVTKA LYGTVQYMIM PAIGLTLAVL SIHFFSVIEP IILKFFSI