Gene EcDH1_3980 details

Gene Information

• Locus tag: EcDH1_3980
• ID: 0
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli DH1
• Kingdom: Bacteria
• Replicon accession: CP001637
• Strand: +
• Start bp: 4291983
• End bp: 4294169
• Gene Length: 2187 bp
• Protein Length: 728 aa
• Translation table: 11
• GC content: 38%
• Product: ShET2 enterotoxin domain protein
• Protein accession: ACX41580
• Protein GI: 260451158

Plasmid Coverage information

• Num covering plasmid clones: 42
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTACTC GTATTCCTCG TAGTTCTTTC TCTGCAAATA TTAATAATAC AGCCCAGACA 
AATGAACACC AAACCCTGAG TGAATTGTTT TATAAAGAAC TCGAGGATAA ATTTTCTGGC 
AAGGAGCTGG CGACGCCTCT ATTAAAAAGC TTCTCAGAGA ACTGTAGACA AAATGGTCGT 
CATATCTTTA GCAACAAGGA TTTTGTCATT AAATTTTCCA CGTCCGTCTT ACAAGCTGAT 
AAGAAAGAAA TTACGATAAT TAATAAAAAC GAAAACACGA CACTTACTCA AACCATTGCC 
CCAATATTTG AAAAATACCT AATGGAAATT TTACCTCAAC GCTCAGACAC TCTTGATAAA 
CAAGAATTAA ACCTAAAATC AGATAGAAAA GAAAAAGAAT TCCCAAGAAT TAAACTTAAT 
GGTCAATGTT ATTTTCCGGG GCGACCCCAA AACCGTATAG TATGCCGACA CATTGCTGCA 
CAATATATTA ATGATATTTA TCAGAATGTT GATTACAAAC CCCATCAAGA TGATTACTCT 
TCAGCTGAAA AATTTCTCAC GCACTTCAAC AAAAAATGCA AAAACCAGAC TTTGGCGTTG 
GTTTCCAGCC GTCCTGAGGG GCGTTGCGTT GCTGCCTGCG GTGATTTCGG GCTAGTTATG 
AAAGCATATT TTGACAAGAT GGAATCAAAT GGCATCAGTG TTATGGCAGC CATATTACTG 
GTGGATAACC ATGCTTTGAC GGTCCGGCTA AGAATAAAGA ACACAACTGA AGGATGTACC 
CATTACGTGG TTTCGGTTTA TGATCCTAAT GTAACTAACG ATAAAATAAG AATTATGAGC 
GAAAGCAAAG AGAATATTAA ACACTATTCT CTGATGGATT TTATGAATGT AGATTATAGC 
CTCCTGAAAT GGTCAAATGA TCATGTTATT AATCAATCTG TTGCAATAAT TCCAGCACTT 
CCGAAAGAAC AGCTATTGAT GTTAAAAGGA TCTGTGGATG AAATAACCCC TCCATTATCA 
CCTGCAACGA TGAATTTGCT AATGGCAATT GGTCAGAATC ACCAACTTAC GCAACTGATG 
ATTCAACTCC AGAAAATGCC AGAACTACAT AGAACAGAAA TGTTGACTGC CTATAATAGT 
ATTAACCTGC CAGGTTTATA TTTGGCTATA AATTATGGTA ATGCGGATAT CGTTGAGACT 
ATTTTCAATT CATTGTCAGA AACAGGATAT GAAGGATTAC TCTCGAAAAA AAATCTCATG 
CATATTCTGG AGGCAAAAGA TAAAAATGGT TTTTCTGGAT TATTTTTAGC GATATCACGT 
AAGGATAAAA ATGTTGTAAC CTCGATTCTG AACGCCTTAC CTAAACTGGC CGCAACACAT 
CATTTAGATA ACGAACAAGT GTATAAATTC CTGAGTGCCA AAAATAGAAC GTCCAGCCAT 
GTTTTATACC ATGTTATGGC GAATGGTGAT GCCGACATGC TGAAAATTGT TTTGAACGCG 
TTACCTTTGT TAATTCGCAC ATGTCATTTG ACTAAAGAAC AGGTACTCGA TCTCCTGAAG 
GCAAAGGATT TTTATGGTTG CCCAGGACTA TATCTGGCGA TGCAAAATGG ACATAGCGAT 
ATCGTGAAAG TTATTCTTGA AGCATTGCCC AGCCTAGCCC AGGAAATTAA CATTTCAGCT 
TCCGATATTG TAGATCTTCT GACCGCTAAA AGTCTTGCGC GCGACACGGG TTTGTTTATG 
GCCATGCAGC GCGGACACAT GAACGTTATT AATACTATTT TTAACGCATT ACCCACTCTG 
TTTAATACGT TTAAATTCGA TAAAAAAAAT ATGAAGCCCC TCCTCCTGGC AAATAATTCT 
AATGAATATC CCGGTTTGTT TTCAGCGATA CAGCATAAAC AACAAAATGT TGTAGAGACG 
GTTTATCTTG CTTTATCTGA CCATGCACGC CTGTTTGGAT TTACCGCTGA AGATATTATG 
GATTTTTGGC AACACAAAGC CCCACAAAAA TACTCTGCCT TTGAGTTGGC TTTTGAATTT 
GGTCACCGGG TTATTGCTGA ATTAATCCTT AATACATTAA ATAAGATGGC TGAAAGCTTT 
GGCTTTACGG ATAACCCTCG ATACATTGCG GAGAAAAATT ATATGGAAGC TTTACTCAAA 
AAAGCATCTC CCCATACCGT ACGCTAA 

 

Protein sequence

MITRIPRSSF SANINNTAQT NEHQTLSELF YKELEDKFSG KELATPLLKS FSENCRQNGR 
HIFSNKDFVI KFSTSVLQAD KKEITIINKN ENTTLTQTIA PIFEKYLMEI LPQRSDTLDK 
QELNLKSDRK EKEFPRIKLN GQCYFPGRPQ NRIVCRHIAA QYINDIYQNV DYKPHQDDYS 
SAEKFLTHFN KKCKNQTLAL VSSRPEGRCV AACGDFGLVM KAYFDKMESN GISVMAAILL 
VDNHALTVRL RIKNTTEGCT HYVVSVYDPN VTNDKIRIMS ESKENIKHYS LMDFMNVDYS 
LLKWSNDHVI NQSVAIIPAL PKEQLLMLKG SVDEITPPLS PATMNLLMAI GQNHQLTQLM 
IQLQKMPELH RTEMLTAYNS INLPGLYLAI NYGNADIVET IFNSLSETGY EGLLSKKNLM 
HILEAKDKNG FSGLFLAISR KDKNVVTSIL NALPKLAATH HLDNEQVYKF LSAKNRTSSH 
VLYHVMANGD ADMLKIVLNA LPLLIRTCHL TKEQVLDLLK AKDFYGCPGL YLAMQNGHSD 
IVKVILEALP SLAQEINISA SDIVDLLTAK SLARDTGLFM AMQRGHMNVI NTIFNALPTL 
FNTFKFDKKN MKPLLLANNS NEYPGLFSAI QHKQQNVVET VYLALSDHAR LFGFTAEDIM 
DFWQHKAPQK YSAFELAFEF GHRVIAELIL NTLNKMAESF GFTDNPRYIA EKNYMEALLK 
KASPHTVR