| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_A0024 |
|---|
| Symbol | |
|---|
| ID | 5384079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009704 |
|---|
| Strand | - |
|---|
| Start bp | 44942 |
|---|
| End bp | 45466 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640857096 |
|---|
| Product | conjugal transfer peptidase TraF |
|---|
| Protein accession | YP_001393285 |
|---|
| Protein GI | 153930620 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
|---|
| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 47 |
|---|
| Plasmid unclonability p-value | 0.0928495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGT CACACTCGTT GGCTTTTGTA GTTAGCGGAA TAGCTTTGAT ATCTACAATT
ATTTATATCT CTGGTATTCG AGTTAACACA AGTGAAAGTA TTCCCGTAGG ATTATATTTA
ATGACACCGT CACCTATCTC TAAAGGAGAG TATGTTGTTT TTTGTCCTCC ACCGACAAGT
GATTTTGATA AAGCTAGAAG TCGAGGTTAT ATCAACTCTG GTTTCTGCTC AGGTAACTAT
GGTTATATGA TGAAGAGAAT TTTAGCCGCT AAAGGAGATG TTGTTTCTAT TAATAGTAAT
GGTGTGATTG TTAATAATAT TAAAATACCC TATAGCAAGC CTCTCTCTGT TGATTTGTCA
GGGAACCCAC TGCCTAGCAT TAATATACTC AATCATACAT TGCAAGAATC AGAGCTTCTT
TTAATGACTG ACCAAAGTAA TAGTTCTTTT GATTCGCGAT ATTTCGGTTT TATTGATAAA
CAACAAATAC ACAGTGTTAT TCGTCCAATA TTAAGTTGGA AGTAA
|
|---|
| Protein sequence | MKQSHSLAFV VSGIALISTI IYISGIRVNT SESIPVGLYL MTPSPISKGE YVVFCPPPTS
DFDKARSRGY INSGFCSGNY GYMMKRILAA KGDVVSINSN GVIVNNIKIP YSKPLSVDLS
GNPLPSINIL NHTLQESELL LMTDQSNSSF DSRYFGFIDK QQIHSVIRPI LSWK
|
|---|
| |