Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3975 |
Symbol | |
ID | 5385652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 4459699 |
End bp | 4460379 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640867006 |
Product | HAD family hydrolase |
Protein accession | YP_001402923 |
Protein GI | 153949914 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
Num covering plasmid clones | 59 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCCCCG ATTTTAACTG GCAAGAAATT GATACCGTAC TGCTAGATAT GGATGGCACC CTGCTGGATT TGGCGTTCGA CAGCCATTTC TGGTTAAAAT TAGTGCCAGA AACCCTGAGC CAACGCAGAG GGATCCCACT CGAACAAGCG CACAAAATCA TTCATGATGA ATATAACGCG GTACAGCATA CCTTGAATTG GTATTGCTTC GATTACTGGC GCGAACGGCT GGATTTAGAT ATTTATGCCA TGACCACGGA TATCGGCAGC CGGGCACGCT TACGTCAGGA TACCGTGCCA TTCTTATCTG GTTTGCGTCA GCATGGTCTG CAAACCATTT TGCTCACCAA TGCCCATCCA CATAGTTTGG CAGTAAAAAT TGAGCACACC GCCCTTGACC AGCACCTTGA TTTATTGCTT TCCACCCATA CATTTGGTTA TCCGAAAGAA GATCAACGGT TGTGGCAAGC GGTTACGCAG CATACCGGGC TGAACCCCGC CAGAACATTG TTTGTCGATG ATAGTGAAGC GATTTTGGAT GCGGCGCAAA CCTTTGGTAT CCGCTACTGC CTGGGGGTAG AAAACCCTGA CTCCAGTTGT GCTGATAAAA CCTTTCACCG ACACCCGGCA ATCAATGACT ATCGTAAACT GTTGCCCGCT TTACAGTTAC GTTGTGAATA A
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Protein sequence | MPPDFNWQEI DTVLLDMDGT LLDLAFDSHF WLKLVPETLS QRRGIPLEQA HKIIHDEYNA VQHTLNWYCF DYWRERLDLD IYAMTTDIGS RARLRQDTVP FLSGLRQHGL QTILLTNAHP HSLAVKIEHT ALDQHLDLLL STHTFGYPKE DQRLWQAVTQ HTGLNPARTL FVDDSEAILD AAQTFGIRYC LGVENPDSSC ADKTFHRHPA INDYRKLLPA LQLRCE
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