Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_3469 |
Symbol | |
ID | 5384552 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 3911987 |
End bp | 3913366 |
Gene Length | 1380 bp |
Protein Length | 459 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640866482 |
Product | major facilitator transporter |
Protein accession | YP_001402424 |
Protein GI | 153947347 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.00699451 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTCAAG ATCACAATTC ATCTCAAGTC GGCTCATCCC AAATCGACTC ATCTCAACAT CATGTTGATC AACAACATAA TCATAATCGT CGATTGAATA AGCAAGATTA CAAAACACTC ACCTTAGCCG CATTAGGTGG AGCGTTAGAA TTCTATGATT TTATTATTTT TGTCTTCTTT GCTGCGGTTA TTGGTGATCT TTTCTTCCCG GCTGATATGC CTGAATGGCT TCGTCAGGTG CAGACGTTCG GTATTTTTGC TGCGGGTTAC TTGGCTCGCC CATTGGGTGG GATCATCATG GCACATTTTG GTGATTTGGT TGGGCGTAAA AAGATGTTTA CTCTTAGCAT CTTATTAATG GCGTTGCCAA CACTGGCTAT TGGCATGTTG CCGACATATG CCACTATCGG GATCACCGCA CCTTTACTTC TACTATTAAT GCGGGTATTA CAAGGTGCTG CCATTGGTGG CGAAGTTCCC GGTGCATGGG TCTTTGTGGC AGAACATGTG CCACGTAAAC GTATTGGCAT TGCCTGCGGT ACCTTAACGG CCGGTCTGAC TGCTGGGATT TTGTTAGGAT CGCTGGTTGC TACAGTCATG AATACTACGC TGGGCCATCA GGCGATTTTG GAGGGGGGAT GGCGTATACC GTTCTTCTTG GGCGGAATTT TCGGTTTGTT TGCCATGTAT TTACGCCGTT GGTTGCAGGA AACTCCGATC TTTAAAGAAA TGCAGGCGCG TAAAACATTG GCTGAAGAAT TGCCGCTAAA ATCGGTGGTG GTAAACCATA AGAAAGAAGT GGTTGTTTCG ATGCTGCTGA CTTGGTTGCT CTCTGCTGGC ATCGTCGTCG TTATTTTGAT GACACCAACC TATCTACAGA AGCAGTTTAA TGTACTGCCA GAGTTGGCAT TGCAGGCAAA CAGTTTGGCG ATTATCGCAT TGGTTATCGG CTGTGTGGTT GCCGGATTGG CAATTGATCG CTTTGGGGCC AGTAAAACCT TTATCGTTGG CAGCCTGATG CTGGCGATGT CGACATGGTC GTTCTATCAC ACCAATCTGA CCAATCCAGC TCAGTTATTT CCCCACTATA TGTTGGCTGG CTTCTGTGTC GGTATCGTTG GTGCCGTGCC TTATGTCATG GTGCGAGCCT TTCCGGCAGA AGTCCGCTTC ACAGGCATCT CTTTCTCGTA CAATGTTGCT TATGCCATTT TTGGTGGTTT AACACCTATT CTGGTGACCT TATGGATGAA GTCATCTGCA ATGGCTCCGG CGTATTACAT GTTGGTACTA TCACTGGTGG GATTGTTATT GGGTATTTAT CTGCGTAACG ACATTAATAG TGAAGTGAAG GTTCAGATGC CTAAGAGGGT GATTAACTGA
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Protein sequence | MSQDHNSSQV GSSQIDSSQH HVDQQHNHNR RLNKQDYKTL TLAALGGALE FYDFIIFVFF AAVIGDLFFP ADMPEWLRQV QTFGIFAAGY LARPLGGIIM AHFGDLVGRK KMFTLSILLM ALPTLAIGML PTYATIGITA PLLLLLMRVL QGAAIGGEVP GAWVFVAEHV PRKRIGIACG TLTAGLTAGI LLGSLVATVM NTTLGHQAIL EGGWRIPFFL GGIFGLFAMY LRRWLQETPI FKEMQARKTL AEELPLKSVV VNHKKEVVVS MLLTWLLSAG IVVVILMTPT YLQKQFNVLP ELALQANSLA IIALVIGCVV AGLAIDRFGA SKTFIVGSLM LAMSTWSFYH TNLTNPAQLF PHYMLAGFCV GIVGAVPYVM VRAFPAEVRF TGISFSYNVA YAIFGGLTPI LVTLWMKSSA MAPAYYMLVL SLVGLLLGIY LRNDINSEVK VQMPKRVIN
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