Gene YpsIP31758_1392 details

Gene Information

• Locus tag: YpsIP31758_1392
• Symbol: ccmF
• ID: 5385165
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 1630134
• End bp: 1632104
• Gene Length: 1971 bp
• Protein Length: 656 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640864375
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: YP_001400371
• Protein GI: 153947996
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 44
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCCCTG AAATTGGCAG TTTTTTATTA TGTTTGGCGT TGGCGATTTC ACTGCTGCTG 
AGTCTGTATC CACAATGGGG AGCCGCGCGT CAGGATGCCC GTATGATGGC GGTTGGCAGG 
CCACTGACTT ATGGCATGTT TGCCGCGATC ACGTTGTCAT TTATCTGTCT GATATATGCA 
TTTGTGGTAA ATGATTTTAC CGTCTCCTAT GTCGCGGCGA ATTCCAACTC ATATTTGCCG 
ATTTATTACC GTATTGCCGC GAGTTGGGGA GCGCACGAAG GCTCCTTATT ATTATGGGTA 
TTGCTGCTCA GTTGTTGGTC ATTGGCGGTA GCGCTGTTTA GCCGTTCGAT GCCAGAGGAT 
GCGGTGGCGC GGGTGTTATC CGTGCTGGGA ATGATTACCG GCGGTTTTCT GCTATTTATT 
ATTCTGACGT CTAACCCGTT CTCTCGCACA TTACCTGATT TTCCTATTGA TGGCCGCGAT 
CTGAACCCGC TACTACAAGA TGTTGGGTTG ATTTTCCATC CCCCGCTGCT CTACATGGGG 
TATGTCGGTT TCTCCGTCGC GTTTGCTTTT GCAATTGCAT CATTAATGGC CGGTAGGCTC 
GACAGTGCCT GGGCGCGTTG GTCACGTCCA TGGACTCAGG CCGCATGGGT TTTCCTAACG 
CTTGGCATCG TACTTGGCTC AGCGTGGGCT TATTATGAAT TGGGGTGGGG CGGCTGGTGG 
TTCTGGGACC CGGTCGAAAA TGCCTCCTTT ATGCCGTGGC TGGCAGGTAC CGCACTGATT 
CACTCACTGG CTGTCACGGA GAAGCGCGGT ACTTTCAAAG CGTGGACGGT ATTGTTGGCG 
ATCACCGCGT TCTCCTTGTG TTTGATGGGG ACATTCTTAG TCCGCTCAGG CGTGCTGGTT 
TCGGTGCACT CCTTTGCCTC TGATCCGGCC CGTGGCATGT TTATTCTGGC CTATCTGGTG 
ATTGTGATTG GCGGTTCCCT GCTGCTGTAT GCGGTAAAAG GCGCGCAGGT GCGCAGCCGG 
ACTCAGCATG AAGTCTTTTC CCGCGAGACT TTCCTGCTCG GCAACAATGT GTTGCTTATT 
GCCGCAATGC TCGTGGTGTT GCTGGGAACA TTACTGCCAC TGGTTCACAA ACAGTTGGGA 
TTGGGCAGTA TCTCCATTGG TGAACCGTTC TTTAATACGA TGTTCACTTG GTTAATGGCT 
CCGATGGCAT TGCTCATGGG GATAGGGCCG CTCGTGCGTT GGCGTCGTGA TGAACCGAGC 
AAACTGTGGA AGCGGTTGAG TGTGGCTCTG GTGGTCACTC TGCTGTTATC GATATCCGTA 
CCGTGGCTGC TGCAAGATAG TGTTGCCGGT ATGACGGTCG TCGGGTTGAT GATGGCCATT 
TGGGTGATCA TCCTGACATT AATGGAATTG CACGAACGGG CCACCCATCG TTATGGCTTC 
TGGCGTGGGT TGACTCACCT TTCCCGTAGC CACTGGGGCA TGGTGTTGGG GCATCTCGGG 
GTGGCGGTTA CGGTAATTGG GATTGCGTTT AGCCAGAATT ACAGTGTCGA ACGCGATGTG 
CGCATGAAGG CCGGTGATAG TATCGATATC CATGATTATC ACTTCACTTT TCGCGATGTC 
CACGATATCA AAGGGCCTAA CTATACCGGC GGCGTTGGCA TTATTGATGT CACCCGTAAT 
GGTAAATTGG AGGCCACATT ACATGCAGAA AAACGCTATT ACAGTGTCGC CCGCTCAATG 
ATGACTGAAG CAGCCATTGA TGGGGGGCTG ACCCGCGATC TTTATGCCGC CTTGGGTGAA 
GAGCTGGGCG ATGGCTCATG GGCGGTCCGC TTGTATTACA AACCTTTTGT GCGTTGGATA 
TGGTTTGGCG GGATCTTTAT GGCCGTCGGC GGCATCTTCT GTATGCTCGA TCCGCGCTAT 
CGGATGAGTA AAAAGCTAAA ACGCGGTGCG ATACCGGAGG CAGAGTCATG A 

 

Protein sequence

MIPEIGSFLL CLALAISLLL SLYPQWGAAR QDARMMAVGR PLTYGMFAAI TLSFICLIYA 
FVVNDFTVSY VAANSNSYLP IYYRIAASWG AHEGSLLLWV LLLSCWSLAV ALFSRSMPED 
AVARVLSVLG MITGGFLLFI ILTSNPFSRT LPDFPIDGRD LNPLLQDVGL IFHPPLLYMG 
YVGFSVAFAF AIASLMAGRL DSAWARWSRP WTQAAWVFLT LGIVLGSAWA YYELGWGGWW 
FWDPVENASF MPWLAGTALI HSLAVTEKRG TFKAWTVLLA ITAFSLCLMG TFLVRSGVLV 
SVHSFASDPA RGMFILAYLV IVIGGSLLLY AVKGAQVRSR TQHEVFSRET FLLGNNVLLI 
AAMLVVLLGT LLPLVHKQLG LGSISIGEPF FNTMFTWLMA PMALLMGIGP LVRWRRDEPS 
KLWKRLSVAL VVTLLLSISV PWLLQDSVAG MTVVGLMMAI WVIILTLMEL HERATHRYGF 
WRGLTHLSRS HWGMVLGHLG VAVTVIGIAF SQNYSVERDV RMKAGDSIDI HDYHFTFRDV 
HDIKGPNYTG GVGIIDVTRN GKLEATLHAE KRYYSVARSM MTEAAIDGGL TRDLYAALGE 
ELGDGSWAVR LYYKPFVRWI WFGGIFMAVG GIFCMLDPRY RMSKKLKRGA IPEAES