Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0733 |
Symbol | |
ID | 5385459 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 896953 |
End bp | 899301 |
Gene Length | 2349 bp |
Protein Length | 782 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640863701 |
Product | type VI secretion system family protein |
Protein accession | YP_001399722 |
Protein GI | 153947279 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria [COG4253] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACCA CTCTCCCGAC TCTTCGGTTT GACCATAGCC ACCACAAACT GGTGGTCCGC GACAGCACCG CCGCCGTTGA TGTGTTGGGC TTTGAAGGCC ACGAAAGCCT GAGCCAGCCG TTCTGTTACG ACATCCAATT CACCAGCGCC GACAAGGCGA TTGACCCGGC CACCATGCTG ATGCAGGACG CGTCACTGAC ATTGGCGGCC CCGGTGGCCG AAGCTTTTGG CGTGACGGTT CAGCAGACCC AGCGAGTGAT CCAAGGGGTG GTCACCGGAT TTAAACGCCT GTCGGCCTCG AAAGAGGAAT GCCGCTACGA ACTGAGCCTG CAACCGCGCC TGGCCTTGTT GTCGCGCAGC CATCAGAACG GGATATATCA GGACATGTCG GTGCCGCAGA TTGTGGAAAA AATTCTGCGT GAGCGCCATG ACATGCGCGG TCAGGATTTT GTCTTCACGC TGGCCCGCGA GTACCCACGC CGCGAGCAGG TAATGCAATA CGGCGAGGAT GACCTGACCT TTATCCGCCG CCTGCTGGCC GAGGTGGGGA TCTGGTTTCG TTTTACCGCC GATCCCAAAC TCAATATTGA TGTGGTGGAG TTTTACGACG ACCAGCGCTT CTATCAGCAA GGACTGACGC TACAGGCGGT GCCGCCTTCG GGGATGCACG ACAGCGGGAT GGAGTCGGTC TGGGACTTGT CCAGTGCTCA TCAGGTGGTT GAAAAATCGG TCAGTACCGG CGATTACAAC TACCGCACCG CGACTGCCGA TATGACGGCC GGGGCAGACA TCACTCGGGG TGATACCACC ACCTACGGCG AAGCTTATCA TTACGCCGAT AACTACCTGA CCGCAGGCAG TGAAGGGCGC GAGCCGGAAA GTGAAAGCGG GGCCTTTTAT GCCCGTCTGC GCCATGAACG TTACCTCAAT AATCAGGCGC GCTTCGCCGG GGTGGCCAAT GCGGCGGCAC TGTCACCGGG TCAGGAACTG AAAGTCACCG GCAACGACGT GCCAGCACAG TTTGGTAAAG GGGTGATAGT CACCCGCATC ACCAGCCACG CCCGCCGCGA CCGCAGCTAT GAAGTGCATT TTGAGGCCAT CCCTTACTCC GAAGAGTATT GCTTCCGCCC GATCCTCATC AACAAGCCAA AAATGGCTGG CACCTTGCCC GCACGGGTCA CCAGCACCAC CGCGAATGAC ACCTACGGAC ACATCGACAA AGACGGCCGC TACCGTGTCA ATCTGATGTT CGACCGGGAC AGTTGGGAGC CGGGTTACGA GAGCCTGTGG GTCCGTCAGG CCCGGCCATA TGCGGGTGAC ACCTACGGCC TGCACCTGCC GCTGCTGGCC GGTACCGAAG TGGCGATTGC ATTTGAAAAC GGCAACCCGG ACCGGCCGTA TATCGCCTAT GTGCTGCACG ACTCGGCGCA CGGCGACCAT GTCACCATCA GCAACTACAA ACGCAACGTA CTGCGCACTC CGTCGAACAA CAAACTGCGC CTGGAGGATG AACGGGGTAA AGAGCACATC AAGCTCAGCA CCGAATATGG CGGCAAAAGC CAACTGAATC TGGGGCATTT GGTTGATAAC GAGAAACAGC CTCGGGGTGA GGGTTTTGAG CTGCGCACCG ACAGTTTTGG TGCATTGCGG GCAGAAAGGG GCATTTTTAT CAGTGCCGAC GGCCAGGCGA AGGCACAGGG GCAGGTGCTG GAGATGCAAC CGGCTATTGG CCTGTTGCAA GGTGCTCAGG AACAGATGGA GGCCATCTCC GCGGATGCAC AAACCGCCAC CGCCAGTCCG GCCGACCTGC AGGCACAAAT CAGTTTGTTA CAGCAAAATC TGAACGAGCT GAAACAGGCG GTGGTATTGC TGAGTGCGCC CAAAGGCATC GCCCTGAGCA GTGGTGAGCA TTTACAACTG TCGGCCAGCG AAAATCTGAT AGCCACTGCC GGTAAGAATG CGGATATCAG TGTAGGTAAG AATTTTTTTA TCGGTGTGGG CAACACGCTG AGCGTATTTG TACGCAAGCT GGGGATAAAG TTGATAGCGA ATCAGGGAGC AATAACGGTA CAGGCCCAGA ATGATCTGAT GGAGTTATTG GCGCGTAAAG CGATCACGAT CACCAGCACC GAGGATGAGA TAAAAATCAC CGCCAAGAAG AAGATAACGC TAAATGCAGG CGGCAGTTAT ATCACGCTGG ATGAGAATCG GATCGAGTCA GGAACGGCGG GGGAATATTT GACCAAAGCA GGGTATTACG GGCGACAGGA AAAGGCAAAT AAACCAGAAG ATTTTCCGAG TGTTGCCCCG GAAACAACAG AACCCACCAG TCATTTCACT TTTTCCTGA
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Protein sequence | MNTTLPTLRF DHSHHKLVVR DSTAAVDVLG FEGHESLSQP FCYDIQFTSA DKAIDPATML MQDASLTLAA PVAEAFGVTV QQTQRVIQGV VTGFKRLSAS KEECRYELSL QPRLALLSRS HQNGIYQDMS VPQIVEKILR ERHDMRGQDF VFTLAREYPR REQVMQYGED DLTFIRRLLA EVGIWFRFTA DPKLNIDVVE FYDDQRFYQQ GLTLQAVPPS GMHDSGMESV WDLSSAHQVV EKSVSTGDYN YRTATADMTA GADITRGDTT TYGEAYHYAD NYLTAGSEGR EPESESGAFY ARLRHERYLN NQARFAGVAN AAALSPGQEL KVTGNDVPAQ FGKGVIVTRI TSHARRDRSY EVHFEAIPYS EEYCFRPILI NKPKMAGTLP ARVTSTTAND TYGHIDKDGR YRVNLMFDRD SWEPGYESLW VRQARPYAGD TYGLHLPLLA GTEVAIAFEN GNPDRPYIAY VLHDSAHGDH VTISNYKRNV LRTPSNNKLR LEDERGKEHI KLSTEYGGKS QLNLGHLVDN EKQPRGEGFE LRTDSFGALR AERGIFISAD GQAKAQGQVL EMQPAIGLLQ GAQEQMEAIS ADAQTATASP ADLQAQISLL QQNLNELKQA VVLLSAPKGI ALSSGEHLQL SASENLIATA GKNADISVGK NFFIGVGNTL SVFVRKLGIK LIANQGAITV QAQNDLMELL ARKAITITST EDEIKITAKK KITLNAGGSY ITLDENRIES GTAGEYLTKA GYYGRQEKAN KPEDFPSVAP ETTEPTSHFT FS
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