| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A2014 |
|---|
| Symbol | fliF |
|---|
| ID | 5800484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | - |
|---|
| Start bp | 2100461 |
|---|
| End bp | 2102173 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641339935 |
|---|
| Product | flagellar MS-ring protein |
|---|
| Protein accession | YP_001606485 |
|---|
| Protein GI | 162421303 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
|---|
| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.410947 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCCT CGATAACTGG CGGTGAAAAT CGTGAGAACA CGTTTACGAT GACACTAGCA
CGCCTACGCG CGAACCCCAA AATCCCCCTG CTGATTGCTG CGGCTGCTGC TATTGCTATC
ATTGTCGCCT TGATGCTCTG GGCTAAAAGC CCGGATTATC GCGTCCTTTA CAGCAATCTC
AGTGATCGTG ACGGCGGTGA TATCGTCACC CAACTGACAC AACTGAACAT CCCTTATCGT
TTCGCTGATA ATGGTGGCGC ATTGCTAATC CCCGCTGAGA AAGTGCATGA AACCCGCTTG
CGGTTGGCAC AACAGGGTTT ACCGAAAGGT GGAGCTGTGG GTTTTGAATT GCTGGATCAG
GAAAAATTCG GCATCAGTCA ATTCAGTGAG CAGATAAATT ACCAGCGGGC ATTGGAAGGT
GAATTATCCC GGACCATCGG CACACTCGGG CCAGTATTGA ATGTACGAGT GCATTTGGCG
ATGCCCAAAC CCTCGTTATT TGTCCGTGAA CAAAAATCCC CGACCGCCTC GGTCACCCTC
GCCTTACAAC CAGGTCGCGC ATTAGATGAT GGCCAGATCA ATGCCATCGT TTATATGGTT
TCCAGTAGCG TGGCAGGCTT GCCGCCGGGT AACGTCACCG TGGTTGACCA AACGGGCCGT
CTGTTGACGC AATCAGACAG TGCAGGCCGC GATTTAAATG CTTCGCAATT GAAATTCACC
AGCGAAGTCG AAAACCGTTA TCAGCGCCGT ATTGAAAATA TTCTGGCACC GATGGTCGGC
AACGGTAATG TTCATGCTCA GGTGACTGCG CAGGTTGATT TTGCCAGCCG TGAACAAACG
GATGAAGAGT ACAAACCGAA TCAGGCCGCC AACCAAGGTG CTGTCCGCTC TCAACAGGTG
AGTACCAGCG AACAACTGGG CGGAACCAAC GTAGGCGGTG TGCCGGGGGC GTTATCGAAC
CAACCGCCAG TGGCACCGAT AGCCCCGATT GAAATCCCAC AACCGGCAGG GGCCGCCGCC
AATAATGCCG CTCCGGCTAA TACGGCGGCA ACGGCTAACG CAAATACGAC AGCAACCGCC
GCGAAAGCCA GTTCCAGCAA TAGTCGCCAT GACCAAACGA CAAACTTCGA AGTTGACCGC
ACCATCCGCC ATACCCAGCA GCAAGCAGGT ATGGTGCAGC GTTTATCCGT CGCGGTGGTG
GTGAACTACA CCAGCGATAA AGCCGGTAAA CCGATTGCAC TGAGTAAAGA TCAGTTGGCG
CAGGTGGAGT CACTGACCCG TGAGGCGATG GGTTTCTCTA CCGTCCGTGG TGACACACTG
AACGTAGTCA ATACCCCCTT CACAGCCAGT GACGATACCC GTGGCAGCAG CCTACCGTTT
TGGCAACAGC AATCCTTCTT TGATCAGTTG CTGAATGCCG GCCGCTACCT GCTGATCCTA
CTGGTTGCCT GGATTTTGTG GCGCAAACTA CTTCGCCCAA TGCTCGCCAA AAAACAGGTT
GCAGATAAAG CGGCCGCCTC GGTCAATAAC ATCGTTCAAA CCGCACAAGC GGCTGAGACA
GTAAAACAAA GTAAAGAAGA GCTGGCCCTG CGTAAGAAGA ATCAGCAGCG GGTGAGTGCT
GAAGTTCAGG CCCAGCGTAT ACGCGAACTG GCGGATAAAG ACCCACGTGT TGTGGCGTTG
GTGATCCGTC AATGGATGAG TAATGACCAA TGA
|
|---|
| Protein sequence | MNASITGGEN RENTFTMTLA RLRANPKIPL LIAAAAAIAI IVALMLWAKS PDYRVLYSNL
SDRDGGDIVT QLTQLNIPYR FADNGGALLI PAEKVHETRL RLAQQGLPKG GAVGFELLDQ
EKFGISQFSE QINYQRALEG ELSRTIGTLG PVLNVRVHLA MPKPSLFVRE QKSPTASVTL
ALQPGRALDD GQINAIVYMV SSSVAGLPPG NVTVVDQTGR LLTQSDSAGR DLNASQLKFT
SEVENRYQRR IENILAPMVG NGNVHAQVTA QVDFASREQT DEEYKPNQAA NQGAVRSQQV
STSEQLGGTN VGGVPGALSN QPPVAPIAPI EIPQPAGAAA NNAAPANTAA TANANTTATA
AKASSSNSRH DQTTNFEVDR TIRHTQQQAG MVQRLSVAVV VNYTSDKAGK PIALSKDQLA
QVESLTREAM GFSTVRGDTL NVVNTPFTAS DDTRGSSLPF WQQQSFFDQL LNAGRYLLIL
LVAWILWRKL LRPMLAKKQV ADKAAASVNN IVQTAQAAET VKQSKEELAL RKKNQQRVSA
EVQAQRIREL ADKDPRVVAL VIRQWMSNDQ
|
|---|
| |