| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A1888 |
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| Symbol | |
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| ID | 5800359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pestis Angola |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010159 |
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| Strand | + |
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| Start bp | 1961980 |
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| End bp | 1963896 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641339818 |
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| Product | putative autotransporter protein |
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| Protein accession | YP_001606373 |
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| Protein GI | 162420070 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0815512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00028295 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACAAAA CATTATTGGC CGGTGCTATC AGTCTATCTT TAGTTATATT ACCTGTTCAG
GTATTGGCTT TTACACCGAA TGTGGTGGGA ATAACTGTCA ACGATGAAGT CGTCATTCAT
GGTATACAGA ATGTGCGCGA CGGCGGAGTC ATTAATAATG GGCTGGTTAG TGACAATGCC
GCAATTACTG TCACCAACGG GAGCAGTGCT GGTACGGCAA ATAATACTAC CGTGGGTGAT
AAAGGCTGGT TACAGATTAC CGGTGCTCTG GCGACGGGTA CCATTGTTAA TCAAGGCGGG
CTGCTTGACA CCAAAACGGC GGGTACCGTA ATAGATAGCC AAATTAATGA TGGCGGCCAT
ATGACTCTGG GACTTAATAG CCAGTCTAAA GGCTACCTCA ATATAGCGGC TGGCGCAGAA
CTTTTTGTTA CCAACAACGA TCCATACATC TCCGATGTGA CCACCCATAA CCCCGCACTG
CCTGCCAATG TTATGATTGA GAACCTCAAC GTCGCGGGTC TGGTCGAAAT CGGCCCTTCC
TGGAAGGGCA CGAGTATCGT GCCGCTTCCC CTCTCTGACG TTTTAGGGCC GGTGCTGGTT
ACCCGAATCA ATAATGTGAC TTTGCAAGGG GGGGATATCA ATTTAATGGC CTATTCTGCT
GGTGGGCAAT TTAACCGGCT GGAGATAGAA AATTTGTCTG GTCAGGGTAA TTTTGCGATG
ACAACCCAGC TTGCCAGCAA TACCGGGGAT TTCATTACGG TCTCACAGCA GGCGACCGGC
CAATTTGGTA TTACCGTTCA GGACAGCGGT AAAGAGCCGC AATCTGCCGA CAACCTGGTA
CTGGTACATA TTAATCGTGG TGATGCTCAG TTCCGTTTAC TCAATACAGG CGGAGTGGTG
GATTTAGGTG TTTACCAATA CGGGCTATAT AGTCAGGAAA GCAATGGCAG CACTGACTGG
TATCTGGCAA CTAGCACAGA AGAACTGCCT GGTACAACAC CGAACGTAAC CGCTCCAATG
CTCAGTTCCG CAGCACAAGG TGTGCTGAAT ATGGCAGCGG CACCGCGGCA TATCCTGAAT
GCGGAATTGA GTACCTTGCG TCAGCGCCAA GGCGAGTTGA AGGCAGATGC GGAAGGGACT
GTTGGCGTTT GGGCGCGTTA CCTTACAGAT GACAGCCGGT TGTCTGATAA TAAAAATATC
GCTTTCAAGA ATACCTTAAG TGGCATGGAA ATTGGGGCCG ATAAACAACT TGGATTAAAC
CGGGGTAATA TGTTGATCGG AGCATTTACC TCCTACAGTT CATCTGATGT CAAATCCACC
CACGACGCTA ATGGTGATAT TCGCAGTTAC GGTGGTGGCC TCTATCTGAC CTATTTGGAT
CAAAGCGGAT TTTATGTTGA TACGGTGCTA AAAGCTAACC GCTTTAATAA TAAGATGAAT
ACACAGGAAA CCCGTGGCGA ATATAACCAG AATGCTCTTA CCACCTCAGT AGAAAGTGGT
TATCAATGGC CTGTTTATGC CAATCTGGTG CTCGAACCCT ATGGAAAGGT GAGTTATTCA
CGTATTGGTA GCGCAGATTA TACTCTCAGT AACGGCATGG TAGCGGAAGT GGCGAAAGCC
GATAGCGTGC AAGGCGAGTT AGGCACGGTA CTCGCCGCCT CTTACAGCAT TAACCAAATG
ACGATAAAGC CTTATATTAA ACTGGCTATT ACCCGTGAAT TTACCAAAAG TAATGCTGTA
GCGATTAATA ACATTGGTTT CGATAATGAT TTCTCCGGTA ATGTCGGTAA ATATGGCGTA
GGCATAAATG CGACGGTAGC CAATAACACC GCCATTTTTG CTGAAGTGGA TTATCTCAAT
GGTTCAAAAA TTGAAACACC GGTAACTGCC AATATCGGTT TCCGCCTTCG GTTCTAA
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| Protein sequence | MDKTLLAGAI SLSLVILPVQ VLAFTPNVVG ITVNDEVVIH GIQNVRDGGV INNGLVSDNA
AITVTNGSSA GTANNTTVGD KGWLQITGAL ATGTIVNQGG LLDTKTAGTV IDSQINDGGH
MTLGLNSQSK GYLNIAAGAE LFVTNNDPYI SDVTTHNPAL PANVMIENLN VAGLVEIGPS
WKGTSIVPLP LSDVLGPVLV TRINNVTLQG GDINLMAYSA GGQFNRLEIE NLSGQGNFAM
TTQLASNTGD FITVSQQATG QFGITVQDSG KEPQSADNLV LVHINRGDAQ FRLLNTGGVV
DLGVYQYGLY SQESNGSTDW YLATSTEELP GTTPNVTAPM LSSAAQGVLN MAAAPRHILN
AELSTLRQRQ GELKADAEGT VGVWARYLTD DSRLSDNKNI AFKNTLSGME IGADKQLGLN
RGNMLIGAFT SYSSSDVKST HDANGDIRSY GGGLYLTYLD QSGFYVDTVL KANRFNNKMN
TQETRGEYNQ NALTTSVESG YQWPVYANLV LEPYGKVSYS RIGSADYTLS NGMVAEVAKA
DSVQGELGTV LAASYSINQM TIKPYIKLAI TREFTKSNAV AINNIGFDND FSGNVGKYGV
GINATVANNT AIFAEVDYLN GSKIETPVTA NIGFRLRF
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