| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3368 |
|---|
| Symbol | |
|---|
| ID | 6090513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 3693992 |
|---|
| End bp | 3694507 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641598447 |
|---|
| Product | S-ribosylhomocysteinase |
|---|
| Protein accession | YP_001722088 |
|---|
| Protein GI | 170025583 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1854] LuxS protein involved in autoinducer AI2 synthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000037261 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTAT TGGATAGCTT TACCGTAGAC CATACCATTA TGAAAGCACC GGCAGTACGT
GTCGCTAAGA CGATGAAAAC TCCTCATGGC GACGAGATAA CGGTGTTTGA TTTACGCTTC
TGTGTGCCGA ATAAAGAAGT GATGCCAGAG AAAGGGATCC ATACGCTAGA GCACTTATTC
GCTGGGTTTA TGCGGGACCA CCTCAATGGT GATGGTGTTG AAATTATTGA TATCTCGCCG
ATGGGATGTC GCACGGGTTT CTACATGAGT CTGATAGGGA CACCTGACGA GCAACGGGTT
GCTGATGCCT GGAAAGCGGC AATGGCGGAC GTGCTGAAGG TCACTGACCA GCGGAAGATC
CCTGAGCTGA ATGAATATCA GTGCGGGACT TATCATATGC ACTCGCTGGA AGAAGCTCAG
AGTATTGCTA AAGATATTCT TGACCGTGAT GTGCGTATCA ACCACAACGA AGAGTTGGCA
CTGCCGAAAG AGAAACTGAC TGAATTGCAT ATTTAG
|
|---|
| Protein sequence | MPLLDSFTVD HTIMKAPAVR VAKTMKTPHG DEITVFDLRF CVPNKEVMPE KGIHTLEHLF
AGFMRDHLNG DGVEIIDISP MGCRTGFYMS LIGTPDEQRV ADAWKAAMAD VLKVTDQRKI
PELNEYQCGT YHMHSLEEAQ SIAKDILDRD VRINHNEELA LPKEKLTELH I
|
|---|
| |