| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2625 |
|---|
| Symbol | helD |
|---|
| ID | 6089468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 2879055 |
|---|
| End bp | 2881109 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641597694 |
|---|
| Product | DNA helicase IV |
|---|
| Protein accession | YP_001721355 |
|---|
| Protein GI | 170024850 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.376042 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTTA AAGCGACATC TTTTGGCAAA CATCTGTCTC AGCATCCCTA TAACCGGGTC
CGCTTGCTGA ATGCAGGCAT CGAAGTCTGC GGTGATAAAC ATCAATACCT AATCCCTTTT
AACCAACTGG TTAGTATTCA GTGTAAACGA GGTATCGTTT GGGGCGAGCT TGAATTTGAG
TTGCCGCAGC AGAAAGTTGT ACGGTTGCAC GGTACTGAAT GGCAGGAAAC ACAACATTTC
TATCATTACT TGCTAGGGGT ATGGCAGCAA TGGAGTGAAG AAATGAGCCA GGTTTGTGCG
GAGGTGCTAC ATAAACAGGT GGAGTCAATT AAGCGAATTG AACAGCAGGA TAAATGGTTT
AAACGCAGTG AATTAGGCCA GATACAAGTC ATGATCCGCG AGGCATTCAG TGCCTTACCA
ATGCCAGTGG AACGCTTAGC GGCGTTTGAA TCCTGTCGAG CAGATTATGA ATGCTGCCTG
CGTTGGTTAC AGCAAGGTCG TCACAGTGTT GAACGATGTA ATCAGCAATG GACAGCCCGT
ATGTTGGAGG AGTATCAAGA TTTTTTCCAA AATGTAGAAA CTTCGCCCCT TAATGCCTCA
CAAAGCCGGG CGGTGGTTAA CGGTGAAGAT TCAGTTTTGG TGTTAGCCGG CGCGGGTAGC
GGTAAAACAT CGGTGCTGGT GGCGCGTGCG GGCTGGTTGC TACGTCGTAA TGAGGCACTA
CCTGAGCAGA TTTTATTGCT GGCATTTGGT CGCCAGGCGG CCGATGAAAT GAATAGCCGT
ATTAAACAAC GCTTGGGCGT GGATAGCATC CAAGCTAAAA CTTTTCATGC TCTGGCATTA
CATATTATCC AGCAAGGTAG CCGCAAGACA CCGGTTATCA GCAAGCTTGA GTCTGATAGC
CAGGCCAGAA GGGCGTTGTT AATTCAACAT TGGCAGCAAC AGTGTAGCGA GAAGAAAGCA
CAGGCCAAAG GGTGGCGAGA GTGGCTAACT GATGAGTTGG AATGGGACGT TGCTGACGGC
GATTTCTGGC AGGACAAAAG GTTGGCTGCG AGGCTGGCAA GTCGCCTTGA ACGTTGGGTA
GGGTTGATGC GTATGCACGG TGGCAGTCAG GCTGAAATGA TTGAGCAAGC GAATGACGAG
GTGCGTGACC TGTTTCAAAA GCGTATCCGT TTAATGGCAC CGTTGCTAAA AGCCTGGAAA
ACGGCATTGA AAGATGAGGG GGCCGTCGAT TTTTCTGGGT TGATTCATCA GGCGGTTAAC
TTGCTGGAGA AAGGGCGCTT TGTCAGCCCA TGGAAGCATG TTTTGGTTGA TGAGTTCCAG
GATATCTCAC CACAAAGGGC GATGTTACTC GCGGCGCTGC GTAAACAGAA TAAGCAAACT
TGCCTGTTTG CGGTTGGCGA TGATTGGCAG GCTATTTACC GCTTCAGTGG TGCTGAACTT
TCGCTGACAA CGGCTTTTAG CGAGCATTTT GGTGAAGGTG CTGAATGTGC ACTGGATACG
ACTTACCGCT TTAATGATCG GATTGGTGAT ATTGCGAACC GGTTTATTCA GCAAAACCCT
TATCAACTGA AGAAACCACT TAATAGCTTG AGTAAGGGTA ATAAAAAGTC GGTCATGATT
TTACCCGATG AGCAGTTGGA GGCCCTATTA GATAAATTAA GCGGCTTTGT TAAGGACGGC
GAACGTATCC TAATATTGGC GCGTTACCAT CATTTACGCC CCGAAGTTTT ACAAAAAGCG
GCGACGCGGT GGCCAAAGTT GACTATCGAT TTTATGACCA TCCATGCCAG CAAAGGGCAG
CAGGCTGATT ATGTCATTAT CGTTGGCTTA CATGAGGGTA ATGATGGGTT CCCAGCCGCG
GCGCGGGAAT CTGTACTGGA AGATGTGTTG CTACCTCCTC CCGAAGATTT CCCTGATGCT
GAAGAGCGGC GTTTGCTTTA TGTCGCAATA ACGCGTGCTA AGCACCAAGT GTGGTTACTA
CAAGATACGG CACGGCCTTC TATTTTTGTC TCTCAACTCA GTGAATTAGG TGCCCTGGTA
CAACGTAAGC CCTAG
|
|---|
| Protein sequence | MELKATSFGK HLSQHPYNRV RLLNAGIEVC GDKHQYLIPF NQLVSIQCKR GIVWGELEFE
LPQQKVVRLH GTEWQETQHF YHYLLGVWQQ WSEEMSQVCA EVLHKQVESI KRIEQQDKWF
KRSELGQIQV MIREAFSALP MPVERLAAFE SCRADYECCL RWLQQGRHSV ERCNQQWTAR
MLEEYQDFFQ NVETSPLNAS QSRAVVNGED SVLVLAGAGS GKTSVLVARA GWLLRRNEAL
PEQILLLAFG RQAADEMNSR IKQRLGVDSI QAKTFHALAL HIIQQGSRKT PVISKLESDS
QARRALLIQH WQQQCSEKKA QAKGWREWLT DELEWDVADG DFWQDKRLAA RLASRLERWV
GLMRMHGGSQ AEMIEQANDE VRDLFQKRIR LMAPLLKAWK TALKDEGAVD FSGLIHQAVN
LLEKGRFVSP WKHVLVDEFQ DISPQRAMLL AALRKQNKQT CLFAVGDDWQ AIYRFSGAEL
SLTTAFSEHF GEGAECALDT TYRFNDRIGD IANRFIQQNP YQLKKPLNSL SKGNKKSVMI
LPDEQLEALL DKLSGFVKDG ERILILARYH HLRPEVLQKA ATRWPKLTID FMTIHASKGQ
QADYVIIVGL HEGNDGFPAA ARESVLEDVL LPPPEDFPDA EERRLLYVAI TRAKHQVWLL
QDTARPSIFV SQLSELGALV QRKP
|
|---|
| |