Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_2010 |
Symbol | rnfD |
ID | 6088352 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 2238649 |
End bp | 2239743 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641597077 |
Product | electron transport complex protein RnfD |
Protein accession | YP_001720750 |
Protein GI | 170024245 |
COG category | [C] Energy production and conversion |
COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.079391 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTCA GGCCTGTAAC ACCGACCCAG AACAAAGGGT TGCAGATTGC CAGTTCCCCT TTTACCCACA ATCAACGCAG TACCCGTCGT ATTATGCTGC TGGTTATTCT GGCCTGTATT CCGGGGATTA TCGCCCAGAC TTACTTCTTC GGTTATGGCA GCCTGATTCA AGTCATGCTG GCTATGATCA CTGCACTGTT GGCCGAAGGT GCCGTATTGC AGTTACGTAA ACAACCCGTC ATGGCGCGGT TACAAGATAA CTCTGCCCTG CTGACTGCCT TATTGTTGGG GATAAGCCTC CCCCCATTGG CCCCCTGGTG GATGATCGTG CTGGGCACGC TATTTGCTAT TGTCATTGCC AAACAACTCT ATGGTGGCCT AGGGCAGAAC CCGTTTAACC CGGCAATGGT CGGTTATGTT GTGCTCCTTA TTTCATTTCC GGTACAAATG ACCAGTTGGC TGCCACCGCT ACCGTTGCAA GGAACGTCGG TGGGATTCTA TGACAGTCTC TTAACCATTT TCACCGGTTA TACCCACAGT GGTGAGAATA TTCATCAGCT CCAAGTTGGC TATGACGGCA TCAGCCAAGC GACGCCACTG GATACGTTTA AGACCTCGCT ACGTTCACAG CCAGCAGATC AAATTCTGCA ACAGCCCATA TTTGGCGGTG TGCTGGCGGG TTTAGGCTGG CAATGGGTTA ATACCGGCTT TCTGGTTGGC GGCTTATTGC TACTGTGGCG TAAAGCTATT CACTGGCATA TTCCCGTGAG CTTCCTGCTC GCCTTAGGAG GTTGTGCCGC AGTGAGCTGG ATGATTGCTC CACAAAGCTT TGCCTCACCA ATGCTACATT TGTTCTCCGG TGCCACCATG TTAGGTGCAT TTTTCATTGC TACCGATCCT GTCAGTGCCT CTACAACACC CCGTGGCCGC CTGATATTTG GTGCCCTCAT TGGTATTCTG GTGTGGCTAA TCCGGGTATA TGGCGGCTAT CCGGATGGTG TTGCTTTTGC CGTGTTGCTC GCCAATATTA CAGTTCCGTT GATTGACCAC TATACCCAAC CTCGGGTCTA TGGCCATAAA AGCGGGCACA AATAA
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Protein sequence | MKFRPVTPTQ NKGLQIASSP FTHNQRSTRR IMLLVILACI PGIIAQTYFF GYGSLIQVML AMITALLAEG AVLQLRKQPV MARLQDNSAL LTALLLGISL PPLAPWWMIV LGTLFAIVIA KQLYGGLGQN PFNPAMVGYV VLLISFPVQM TSWLPPLPLQ GTSVGFYDSL LTIFTGYTHS GENIHQLQVG YDGISQATPL DTFKTSLRSQ PADQILQQPI FGGVLAGLGW QWVNTGFLVG GLLLLWRKAI HWHIPVSFLL ALGGCAAVSW MIAPQSFASP MLHLFSGATM LGAFFIATDP VSASTTPRGR LIFGALIGIL VWLIRVYGGY PDGVAFAVLL ANITVPLIDH YTQPRVYGHK SGHK
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