Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1006 |
Symbol | |
ID | 6091067 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1133683 |
End bp | 1134885 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 641596069 |
Product | type II secretion system protein |
Protein accession | YP_001719760 |
Protein GI | 170023255 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGTAT TTAAATATGT TGCCATCAGC AGAAGTGGAA CCAAGATAAC AGGTGATATT GATGCGGAAA ACATACGTAT AGCCCGTTAT CTCCTTTACA AAAAAAACAT GCATGTCTTA AGTATAAAAA AAAGAATTTT ACTTTTTAAT AAGTATGTGG TCAAAAAAAA TAGTAATAAG ACGGATTTGG TATTAATTAC ACGGCAGATA GCGACATTAG TAAATGCTTC AATGCCACTA GATGAGGTTT TAGATATTGT TGGGAAACAA AATAGTAAAA GTAAAATGAT TGAAATAATT CAAAGGATTA GAGTTAATAT ACAGGAAGGG CATTCATTCG CTGATGCGCT ATCTCCGTTT TCAGCAGTAT TTAGCCCATT ATACAAAACG ATGGTTACCG CTGGAGAGGT ATCAGGGCAT CTGGGATTAG TGCTGGTTCG TCTTGCTGAT CATATTGAGC AGACACAAAA AATACAAAGA AAAATCATTC AGGCACTTAT CTACCCTTGT GTGTTGGTTT TAATATCACT AAGTGTCATT ATCATATTAT TGACAGCGGT TGTACCGAAC ATAGTAGAGC AGTTTTCTTT TTCAGAGACG GCGTTACCAT TATCAACAAA AGTATTGATG ATACTCAGTT ATAGTATAAA AGAAAATGTT ATTTTTATCA TGGCTATAGG TGTCTCGGCA GTGATTTTTT TAAATAGATT ACTAAAAATA AATAAGATAA ATGTCTTTTT TCATAGGCAC TATTTAAGTT TGCCAATGCT GGGTAATATG TTTGTTCGTA TAAATACATC TCGTTATCTT AGAACATTAA CAACACTACA TTCTAATGGT GTGACAATCG TACAGGCAAT GAGTATTAGT AATGCGGTAT TAACGAATGT ATATATAAAA AATAAGTTAA ACATTTCAGT TAAATTGGTC AGTGAGGGGT GTAGTTTATC GTCATCTTTA GTTGATAGTG GAGTATTCCC CCCGATCATA TTACATATGA TCATATCGGG GGAGCGTAGT GGTGAGTTGG ACCATATGCT AGAAACTGTG GCGGGTGTCC AGGAAGAAGA ACTGATGAAT CAAATAAGTA TAGTAATGTC ATTGTTAGAG CCAACCATAA TTATAGTTAT GGCCGCGTTT ATTTCATTTG TTATTCTGTC AATTCTTCAG CCAATACTTG AAATTAATAG CCTTGTCATG TAA
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Protein sequence | MAVFKYVAIS RSGTKITGDI DAENIRIARY LLYKKNMHVL SIKKRILLFN KYVVKKNSNK TDLVLITRQI ATLVNASMPL DEVLDIVGKQ NSKSKMIEII QRIRVNIQEG HSFADALSPF SAVFSPLYKT MVTAGEVSGH LGLVLVRLAD HIEQTQKIQR KIIQALIYPC VLVLISLSVI IILLTAVVPN IVEQFSFSET ALPLSTKVLM ILSYSIKENV IFIMAIGVSA VIFLNRLLKI NKINVFFHRH YLSLPMLGNM FVRINTSRYL RTLTTLHSNG VTIVQAMSIS NAVLTNVYIK NKLNISVKLV SEGCSLSSSL VDSGVFPPII LHMIISGERS GELDHMLETV AGVQEEELMN QISIVMSLLE PTIIIVMAAF ISFVILSILQ PILEINSLVM
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