| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0239 |
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| Symbol | |
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| ID | 6088002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 278821 |
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| End bp | 280866 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641595299 |
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| Product | TonB-dependent copper receptor |
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| Protein accession | YP_001719005 |
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| Protein GI | 170022500 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATCTG GGAAAAATAA AGTCTGTAAA AAGAAGTTAT TAGCGTGTGC GGTTACTTCG
GCTATTTCTG CCTTTGCTTC AAATGCCATT GCCGATACTA CGAGTCTGGC TGCAATGAAT
CGCTCAGCCA TTAATATATC AAGCACGCAT AACAGTAATA AAAAACTCAA TGACGCTGAT
GTCATCACGG TAACAGCCCC TCTGTATTCG CCACTGGTGG TTGCCACATC GCCTAAAGTG
CCCCGCCAGC CAGTACCGGC CAGTGACGGT GCTGATTATC TGAGGACCAT TCCCGGTTTT
TCACTCGTCC GTAACGGGGG GACCAATGGT GATGTGGTGT TCCGTGGCAT GTTCGGCTCA
CGGCTAAAAA TTCTGACCGA TGGTGCTGAG ATTTTGGGTA CCTGCCCATC GCGAATGGAT
GCGCCAACCT CGTATATTTC ACCAGAAAGT TTTGATCTAC TCACGGTCGT CAAAGGGCCG
CAATCGGTGC TGTGGGGGCC GGGGGCTTCT GCCGGGACCA TTTTATTTGA ACGGGAGCGC
CCACATTTTG ACCAGTCTGG CGTCAAAGGT AATGCCAGTG TGTTAGCCGG TTCTAATGGG
CGCTGGGATA AAAATCTTGA TGCCAGTTTG GGTAACGAGC AGGGCTATCT GCGGATGATG
GGGAATCAGT CTCGGGCTGC TGATTATAAA GACGGTAACA ATGTTCGCGT GCCCTCTCAA
TGGGATAAGT GGAATGCGGA TATGGCGTTG GGCTGGACAC CCGATACCGA TACATTACTT
GAGCTGTCGG TAGGAAAAGG GAATGGTGAA TCCCGCTATG GCGGTCGCGG TATGGATGGT
TCTCAGTTCC TGCGTGAGAG CCTGGCAGCC CGTGTTGAGA AAAGTAATAT TGGCGAGGTG
CTGGATAAAA TCGAAGCCAA AATTAACTAC ACCTACGTAG ACCATATTAT GGATAACAAG
ACCTTACGTA CCCCACCGAT GATGGCGATG TCTAGCAATC TGGACCGGCG GATGCTCGGC
GGTCGGGTCA TGGGGACCTG GCTGTGGCAG GACCTAAAGC TGGACGCGGG TACCGATATG
CAAACCAATA CACACCGCAA GAATAAACAG GGGAACTGGG ATAAAAACGC CCGTTTCATG
AATAACGGGG TGTTCGGTGA GTTAACCTGG GCGGCAAGTG AACAAAATAA ACTGATCAGC
GGGGCGCGTC TTGACCGTCA CCAAGTGACG AATTATACCC GCGCAGGTGA GCCGACGCGC
TCTGCTACCC TCCCCGCTGC CTTTATGCGT GTTGAGCATA ATCTGGCTAA TGCACCGGTG
ATGTTGTATG CCGGCTTGGG GCATACCGAG CGTTTTCCTG ACTATTGGGA ACTGTTTTCG
CCAAAATTCG GGCCAGCAGG CTCTACTAGC GCCTTTGAGG GTGTAAAAAG CGAAAAAACC
ACGCAGATTG ATATCGGTGG CCAATACAGC GGTGAACAAT TTAGGGGGTG GCTCTCCGCT
TATATTGGCC GGGTTAATGA TTTTATCCTG TTTAAATATG ATCCAAAAAA TCTACGCATC
AGCCAGGCCG ATAATATTAA CGCAACCATT ATGGGCGGCG AGATGGGGAT GGAATATGCC
CTCACCCCGT ATTGGAAGGC TGATGCCAGT CTGGCTTATG CCTGGGGGGA AAATACCCGT
GATAACCGGC CATTGCCGCA AATTCCACCA CTTGAGGCGC GGTTAGGGCT GACATTTGAA
GCAGGCGACT GGAGCAGTTC CGCCTTATGG CGTTTGGTCA ATAGCCAGCA CCGGGTGGCG
ATCAACGAAG GGAATGTCGT CGGTAAAGAT TTTTCCAGCA GTGCGGGGTT CGGCGTACTG
TCGGCTAACG TCGCCTATAA GGTGAATAAG CAAGTGAAGT TAAGTAGCGG CATCGATAAT
TTGCTGAATA AGGCTTACAG CGAACATCTT AATCTGGCGG GTAATAGCGG TTTTGGTTAT
TCAGTTAATA CCCCTCTGAA TGAGCCTGGC CGCACTCTCT GGGCAAAGCT AAACCTAACA
TTCTAA
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| Protein sequence | MISGKNKVCK KKLLACAVTS AISAFASNAI ADTTSLAAMN RSAINISSTH NSNKKLNDAD
VITVTAPLYS PLVVATSPKV PRQPVPASDG ADYLRTIPGF SLVRNGGTNG DVVFRGMFGS
RLKILTDGAE ILGTCPSRMD APTSYISPES FDLLTVVKGP QSVLWGPGAS AGTILFERER
PHFDQSGVKG NASVLAGSNG RWDKNLDASL GNEQGYLRMM GNQSRAADYK DGNNVRVPSQ
WDKWNADMAL GWTPDTDTLL ELSVGKGNGE SRYGGRGMDG SQFLRESLAA RVEKSNIGEV
LDKIEAKINY TYVDHIMDNK TLRTPPMMAM SSNLDRRMLG GRVMGTWLWQ DLKLDAGTDM
QTNTHRKNKQ GNWDKNARFM NNGVFGELTW AASEQNKLIS GARLDRHQVT NYTRAGEPTR
SATLPAAFMR VEHNLANAPV MLYAGLGHTE RFPDYWELFS PKFGPAGSTS AFEGVKSEKT
TQIDIGGQYS GEQFRGWLSA YIGRVNDFIL FKYDPKNLRI SQADNINATI MGGEMGMEYA
LTPYWKADAS LAYAWGENTR DNRPLPQIPP LEARLGLTFE AGDWSSSALW RLVNSQHRVA
INEGNVVGKD FSSSAGFGVL SANVAYKVNK QVKLSSGIDN LLNKAYSEHL NLAGNSGFGY
SVNTPLNEPG RTLWAKLNLT F
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