| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xfasm12_2037 |
|---|
| Symbol | |
|---|
| ID | 6121120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010513 |
|---|
| Strand | - |
|---|
| Start bp | 2133564 |
|---|
| End bp | 2135318 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641649985 |
|---|
| Product | extracellular endoglucanase precursor |
|---|
| Protein accession | YP_001776533 |
|---|
| Protein GI | 170731100 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4305] Endoglucanase C-terminal domain/subunit and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGCT TGGCAATCTT ATTTTGGCTT GCAACATCCG GTTGCGTGGC CTCCGCCATG
TACGGTGGAA CGGTGGATGC ACAAAATGCA GTGTCTGATA CTCACTTTGT TGAACCACTC
CGCGGTGTTA ACTGGCGTGG TTTGGAAACG GCGCAGCACC TGCCGCAAGG TTTAGATCAA
CGTCCCTGGC GTGAAGTACT CGACCAAATG CAGAGCCTAG GTATTAACGC AATACGCCTG
CCCCTGTGCT CGGACACCCT ACATGGCGCC ATGCCTACCA ATCTGGATTT AGTGCGTAAT
CCAGATCTCA AAGGACGTAC CGCATTGCAG ATTGCCGACG CAATCATGGA TGAAGCTGGG
AAACGTGGGA TGCGGGTCCT CCTGGCGTAT CACGGCGTGG AGTGTCCTAC CGACGGAAAC
CCGTTATTGC GCAGCGTAGA TGAATCAGAG CACCAATGGA TCAGCGATAT GCAATTCATC
ACCTCGCATT ATCGTGCTCA ACAAAAAGTG GTGATCGGCG TGGACTTGGC CGACATGGCA
TACCATCGCC CCTTTCAGAG CGGTGGTGAT AGCACGCCTG ATTGGAACCG TGTCGTCGAG
CGTGCCGCCG CTGCCATTCT GGCGATGAAT CCCGACTGGT TGATTGGTGT GCAGCCTGTT
GGCCTGAATC CCCCCTGCTT GGATGCCTCC GCTCCCATCT CCGATGACAA CATAAAATCG
CAGCACTGTG TCCAATTACG CATTCCTGCT CGGAACCTCT TGCTCATGCC GCGCTTCGCG
GGCACTGACA TGGATACTGA AGCTGCCCTT GGCGCATTTT CTGGAAAACA AACCGTGTTA
CCCAACTCTC TGGATGCCAC GGATGCCGAG CAGCTCGCCC ATCGGATTGA TGCACTGCTG
GCATTTGGCA TACGCCAAGG CTTTTATGGA TCTTGGATGA CCTCAGCACA GATGCCATTT
GGCCTGCTCG ATAACGACGG CCGTACCCCA CGTACCGCAT TGATTGCGCA ACTACATCGT
TGGTGGGGTG TGAGCCGTGT CGATGTTGCC AGTGAGAATG CTGCGACGAA GAATCAAACA
ACGACCGATA CCAATGGATG CGTTACTGGT GATAGCAGCG TGCCCCTCAA TGGTTGGGAC
ACCTCTTTCA GTGGTGTCGC CACCTATACC TATACGGGTT ACAAAGGCGG CGCATTGATG
CTGGATCCGA TTCAGTCCCA TGTGCAAATC ACTGCACTGA ATCCCACTCA ACTCAATTTG
GGGGGGATTC CCGCTGCGAT GGCCGGTGCT TATTTGCGTG TGCAGGGTCC GAAGGGAAGC
ACAACCGTCT ACGTGACGGA CCTCTATCCC ACCGGATCTT CCGGGGGATT AGATCTTTCG
CCGAATGCCT TTGCCAGTAT CGGCAATATG GCTCAAGGGC GTATCCCCGT GCAATGGAAG
GTCGTCTCAG CACCGGTGAG TGGCAACCTG ATCTATCGGG TAAAAAAGGG AAGCTCGGGA
TGGTGGGCAG CGATCCAAGT ACGTGAACAT CGGTATCCAG TCCTCAAACT TGAAATCTGT
CAGGATGGCA CCTGGTTGAA TTTGCCAAAG AGAAATTACA ACTACTTTGT TGGTACCCGA
CTGGGTAACC AACCCTTGTC AATGCGCATG ACAGATATTC GTGGTCAGAC CTTGATTGAT
ACGCTTCCCG CCTTGCCCAA GAAGGCTTCC TCAAAAGCAT ATTCTGTGAA TGGAAATGTC
CAGTTTTCCG AATAA
|
|---|
| Protein sequence | MRRLAILFWL ATSGCVASAM YGGTVDAQNA VSDTHFVEPL RGVNWRGLET AQHLPQGLDQ
RPWREVLDQM QSLGINAIRL PLCSDTLHGA MPTNLDLVRN PDLKGRTALQ IADAIMDEAG
KRGMRVLLAY HGVECPTDGN PLLRSVDESE HQWISDMQFI TSHYRAQQKV VIGVDLADMA
YHRPFQSGGD STPDWNRVVE RAAAAILAMN PDWLIGVQPV GLNPPCLDAS APISDDNIKS
QHCVQLRIPA RNLLLMPRFA GTDMDTEAAL GAFSGKQTVL PNSLDATDAE QLAHRIDALL
AFGIRQGFYG SWMTSAQMPF GLLDNDGRTP RTALIAQLHR WWGVSRVDVA SENAATKNQT
TTDTNGCVTG DSSVPLNGWD TSFSGVATYT YTGYKGGALM LDPIQSHVQI TALNPTQLNL
GGIPAAMAGA YLRVQGPKGS TTVYVTDLYP TGSSGGLDLS PNAFASIGNM AQGRIPVQWK
VVSAPVSGNL IYRVKKGSSG WWAAIQVREH RYPVLKLEIC QDGTWLNLPK RNYNYFVGTR
LGNQPLSMRM TDIRGQTLID TLPALPKKAS SKAYSVNGNV QFSE
|
|---|
| |