Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xfasm12_0234 |
Symbol | |
ID | 6119736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M12 |
Kingdom | Bacteria |
Replicon accession | NC_010513 |
Strand | + |
Start bp | 272989 |
End bp | 275985 |
Gene Length | 2997 bp |
Protein Length | 998 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641648315 |
Product | serine protease |
Protein accession | YP_001774891 |
Protein GI | 170729458 |
COG category | [S] Function unknown |
COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain [TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.249897 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAATA TGAAAACGAC ATTTTTTCCC GGTAGCATCC TGGTATTAAC GTTAGTTGCT TTCTTGAGTG CTTGTGGTGG TAGCGGGTTA GTTCGTCCGC CAACGCCAAC GCCAACGCCA ACGCCAACGC CAACACCAAC ACCAACACCA ACACCAACAC CAACGCCAAC GCCAACGCCA ACGCCAACGC CAACGCCAAC GCCAACGCCA ACGCCAACGC CAACGCCAAC ACCAACACCA ACACCAACAC CAACACCAAC ACCATTGCCT GATTTGGATC CGGCGTTAGC TGCCAAGTTT CGCGTGCACC TAGATGTTAC GAATACAGAA CCCGCTCATA CACTTGGCTT TACTGGCAAG GGTTACATGA TTGGTGTGGT CGACTCCGGT GTGAATCGTA ACCATGTGAC GTTGCACGAT CAGGTCATCC ACAACAATGT GTATGTGGAT TATCAAGACC CCGCCAGTCC AGATGATGTG AGTGGCCATG GCACCAACGT GGCACAGCTC ATTGCGGGGC AACCCGTTGA ATACTGGCCC GGTGGTATCG CACCAGGTGC GACTATCTTC TCAGCGCGCG TCTTCTCGTC TGCAGCAGAA AGTGCAAAAG AAGGTCCAAT AGGCGGGAAC TTTTTTGAAG GAGAAGCAGC GCAGCTAAAA CGCGTCAATG CCGACATGAT TGCCGCAGGA GTGCGTATCC AAAACAACTC CTGGGGATAT GAGAATCAGA ACACCGGCGA TAAGCAAGTA TGGATAGATC CAGCGGTGAC AGATGGTTTC GTGAACGTAT ACCGTGATTT AGTGCTGAAT AACAATGTCT TAGTGATCTT CGCCAGTGGT AACTACAGTC AACAGCAACC GGGTCGACTT TCCAGATTGC CGAGCTTGCC CACTGTGGAG GGGGGGGCAT CGCCTGCCGA TCTGGAAAGG GGATGGTTAG TGGTCGCTGC ACTGGATAGT TTCGATCATC CCGACCAATT GACTTCGTAC TCGAACCATT GCGGCATCGC AATGCACTAT TGCCTAGCTG CACCAGGTGA TCTCATTGAA ATCGATACTA ACGTTACGAC TAGCCCAGTG GATGGTGATA AAGGTTATCT AAATGGTTAT TTAATACAGA ACGGCACCTC ATTTGCAGCG CCGTTGGTCT CTGGTGCAGC GGCATTGGTA TGGGAGGCAT TTCCCTATTT CAGCAACGAC CTGGTGCGGC AGACCCTGCT TGGCACGGCG ACTGATCTTG GTGCCCCTGG CGTGGATGAA GTCTTCGGCT ATGGTGCACT GAATGTGGGT AAAGCAGTGC TGGGCCCGGC TAAGTTCGAT TGGGGTGATG TCCAAGTCAG CTTCGATGAC AGGCGTTCCA CCTGGGGCAA TGACATCACC GGCAGCGGCG GCTTGATCAA GCGTGGTACC GGAACACTGA TGCTTGGCGG CAGCAATAAT CAATACACCG GAGCCACCCA AGTCCTGGGA GGTACATTGC AAGCGTCCAG CTTGGGTGCA TCCGCAGTTA GCGTTGCTAA TACTGCGACG TTGATTGGTA GCGGTCGCTT CGGCGGTGCG GTGAGCAATG CCGGCACCCT GGAGCTTGGG AAGGATGGGC TCAAGGTGCA GGGTGATTAC ACCCAATTGG AGACAGGGCG TCTTGCACTG TACGTTGGAG ATCAGCTGAG CGTGGCCGGT AATGCCACCC TGAAAGGGGG GGAACTCCAA GTGTTGGGTA AACGTGATTA TGTGACCTTC AATACTTCCT ACAGCGTATT GCAGGCTGAT GGTAGTTTGA CCGGCACGTT CTCGCAGTTG ACCTGGGGTC CGGCTGTGCT GCTTGGAGAA GGTCGTCTGA CCTACGGCGC TAACAATGCC TACGTGACCC TGCAGCGTCT GAATGTCAGC GCGGCGGCAC AGGCCTTGGG GATCGTTGAT AGAGTTGCGC AGGCCTCTGC CCAGCGTGTT GAGCAGGCAT TTCGTGCAAT TGATGCACAG CAGGCGCAAG GCCGCGGTGC GTTGCCCACC AGTTTTATTG GGGCGGCGGC GGCATTGCAA CAGTCCAGTA GCGCGGCAGT GGCGGCGGGT TCGTTGCAGA GTTTGTCGGG GCAATCGCAT GTTGCGGCGG CGGCGGCTAG CCTTGATGCA ATCGATTTGG GGCGCCGCAG TTTGGCGACG CGTCTAGATG TGCTTCGTTC GGGCGAGCGT ATTGTGACGT GGCATCAAGC CTTGGGTGGT CCGGGGCAGA ATGGTGCGGC TAGCGGCACC TTCTCCCTGT CTGGCTGGTT GGTGGGACAT GATGCGCAAC TTGCCTCCGG TGACATTGTG GGTGTTGCTT TTGGTCAGGC CGATAGCAGC CCCTCCGGTA GTGCCTCTGG GTTGCGAGGG ATAGACAGAC AAGTGCAAGG GCGTGTGTAT TTGCAGCGCA CCCAGGGGCC CTTGTATGTT TTGGGGCAGC TTGGTTTTGG TAGTTTCCAA CGTCGTCTGG ACCGGCAGTT GCAACTGGGT GATTGGAACG ATTGGACATC CAGTCGCTAC AGCGGTCAGT TTTGGAGTGG CAGTGTGGAG GCTGGCTATC ACTGGCGTCA GGGTTCCTTG GCATTGACCC CGTATCTTGG TCTGGATCAA ACGCAGTTGC GGACGGATGG ATTCCGTGAG CAGAGTGGCT CTGGCTTTGG CTTACAGGTG CAGTCCGCCC AAGCGACGCG GAGTCAGTTA CTGGCCGGTG TGCGTACGGA GTGGCGCTGG GGTGGCGTGC AATGGCGTGG TTATGGTGAA TGGCAGCAGA CGTTGCGTCA GAGTGGTTTG AATCCACAGG CTAGCTTTAC AGCGACTTCG TCGTGGACGC CGTTGGTGGC TTCGTCCTGG CCTGGTCGTT CTGGGGGTGT GCTTGGGTTA TCGATGGTCT TGCCTGTCGG GGTGACCGCA GGTCTGTGGA CCATGGGGTT AGAGCATTAC TTTGGTACAC GTAGCCGTGG GGAGAGTCTT GGTCTGCGTT ACCAGCTTGG TTTTTAG
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Protein sequence | MKNMKTTFFP GSILVLTLVA FLSACGGSGL VRPPTPTPTP TPTPTPTPTP TPTPTPTPTP TPTPTPTPTP TPTPTPTPTP TPTPTPTPLP DLDPALAAKF RVHLDVTNTE PAHTLGFTGK GYMIGVVDSG VNRNHVTLHD QVIHNNVYVD YQDPASPDDV SGHGTNVAQL IAGQPVEYWP GGIAPGATIF SARVFSSAAE SAKEGPIGGN FFEGEAAQLK RVNADMIAAG VRIQNNSWGY ENQNTGDKQV WIDPAVTDGF VNVYRDLVLN NNVLVIFASG NYSQQQPGRL SRLPSLPTVE GGASPADLER GWLVVAALDS FDHPDQLTSY SNHCGIAMHY CLAAPGDLIE IDTNVTTSPV DGDKGYLNGY LIQNGTSFAA PLVSGAAALV WEAFPYFSND LVRQTLLGTA TDLGAPGVDE VFGYGALNVG KAVLGPAKFD WGDVQVSFDD RRSTWGNDIT GSGGLIKRGT GTLMLGGSNN QYTGATQVLG GTLQASSLGA SAVSVANTAT LIGSGRFGGA VSNAGTLELG KDGLKVQGDY TQLETGRLAL YVGDQLSVAG NATLKGGELQ VLGKRDYVTF NTSYSVLQAD GSLTGTFSQL TWGPAVLLGE GRLTYGANNA YVTLQRLNVS AAAQALGIVD RVAQASAQRV EQAFRAIDAQ QAQGRGALPT SFIGAAAALQ QSSSAAVAAG SLQSLSGQSH VAAAAASLDA IDLGRRSLAT RLDVLRSGER IVTWHQALGG PGQNGAASGT FSLSGWLVGH DAQLASGDIV GVAFGQADSS PSGSASGLRG IDRQVQGRVY LQRTQGPLYV LGQLGFGSFQ RRLDRQLQLG DWNDWTSSRY SGQFWSGSVE AGYHWRQGSL ALTPYLGLDQ TQLRTDGFRE QSGSGFGLQV QSAQATRSQL LAGVRTEWRW GGVQWRGYGE WQQTLRQSGL NPQASFTATS SWTPLVASSW PGRSGGVLGL SMVLPVGVTA GLWTMGLEHY FGTRSRGESL GLRYQLGF
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