| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1926 |
|---|
| Symbol | |
|---|
| ID | 6203244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | + |
|---|
| Start bp | 2146870 |
|---|
| End bp | 2147940 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641703436 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001830600 |
|---|
| Protein GI | 182682440 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3858] Predicted glycosyl hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00103696 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACTCCC CCCGTATGAC ACAACGTCCC TTCGCCCTAC TACTAACACT CATTTTTGCA
CTGCCTGCGA CCGCAAAAAA TCCAACGGCC CTGTTCTACT TGATGAACAG CGATAAATCG
ACAAACTCCT TCCTTGCCCA CGCCGACAAA ATCGACACAC TCGTCCCCAC CTGGTACAGA
GTAGACCCAA CGGGAGTTGT CAACGGCACA CCTAACGAAC ACGTCTACCG CATCGCCCAA
CAAAAGAAAA TCACCCTCAC CCCCATCCTC TCCATGTCCG GCAGCCGCGA CGGCTTTCAC
ACACTTCTGC ATGACGAAGC AGCAAAAACC CGGATGAACA CATTCCTGGT AAAAGAAAGC
AAAGCACGCG GCTACAAAGG CTTCCAATTC GACTTTGAAA ACATCGCCCA AACCGACCGT
GGCGCCTATA CCTTGATGGT CAAACAGACC GCCGAAGCCC TACATAAAGC AGGCATGACC
CTATCAATCG CCATCGTCCC CAATGCACCT GGCCACCCAG AAGAAGGAGG CGACTTCTCC
AAATGGATGT GGGAATACTG GCGCGGTGTC TACGACCTGA AAGCACTCGG TCAAGCCGCC
GACCTCATCA GCCTGATGAC CTACGACCAA CACACCCGTT GGACCACCCC CGGCCCCGTT
GCCGGCATGC CCTGGACCAA AAAGCACTTG GAATACGCAC TGACCCAGGT ACCGAAAGAA
AAACTATCTC TGGGAATCCC CACCTATGGC TACCGCTGGT TCACCGGTAA CCCAGTCAGA
AAAGACGGCA CTGAAAACTC CAACATTTCC GGCACCTACA TTGACGCCGA CAAATCATTC
CCATTAGCCA TCGCACAAAA AGCCAACGTG CAATGGGATC CTATAGAACA AGAATCATGG
TTCTACTTTT ACCGCGACAA CATGCGCGAA TGGGTCTTCC GCCCTGACGC ACACAGCTTC
CGTGCACGCT ATGACCTGGT GAAACAGAAT GGACTCCAGG GTTTCAGCTG CTGGGTGCTT
GGTGCCGAAG ACCCAAAAAT GTGGGATGAA CTGCCCCTCG CCACCCACTA A
|
|---|
| Protein sequence | MDSPRMTQRP FALLLTLIFA LPATAKNPTA LFYLMNSDKS TNSFLAHADK IDTLVPTWYR
VDPTGVVNGT PNEHVYRIAQ QKKITLTPIL SMSGSRDGFH TLLHDEAAKT RMNTFLVKES
KARGYKGFQF DFENIAQTDR GAYTLMVKQT AEALHKAGMT LSIAIVPNAP GHPEEGGDFS
KWMWEYWRGV YDLKALGQAA DLISLMTYDQ HTRWTTPGPV AGMPWTKKHL EYALTQVPKE
KLSLGIPTYG YRWFTGNPVR KDGTENSNIS GTYIDADKSF PLAIAQKANV QWDPIEQESW
FYFYRDNMRE WVFRPDAHSF RARYDLVKQN GLQGFSCWVL GAEDPKMWDE LPLATH
|
|---|
| |