| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_3094 |
|---|
| Symbol | |
|---|
| ID | 5424621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 3435003 |
|---|
| End bp | 3436865 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640882340 |
|---|
| Product | RNA-binding S4 domain-containing protein |
|---|
| Protein accession | YP_001417981 |
|---|
| Protein GI | 154247023 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.703122 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCA CATCACCGCC CCGCAAGGAC AAGAACCGCG TTCCGCGCAT CAAGCGCGAA
CTCACCCCCG CCGCGCCCAA GGAGGCCGAG CGGATCGCCA AGGTCGTCGC CCGCGCCGGC
CTCGGCTCGC GCCGCGAGAT CGAGGAATGG ATCGAGGCCG GCCGCGTGGC CGTCAACGGC
GAGGTGCTCA CCACCCCTGC CGTCACCGTC ACGGCCGAGG ATGCCATCAC CGTCGATGGC
GCCCCCCTGC CCGAGCGCGA ACGCACCCGC CTCTTCATTT ACCACAAGCC CAGGGGCGTG
GTGACCACCA ATCGCGACCC TGAAGGCCGC ACCACCCTGT TCGAGATCCT GCCCCAGGGC
CTGCCGCGCC TCGTGAGCGT CGGGCGGCTG GATCTGAATT CGGAAGGCCT GCTGCTGCTC
ACCAACGACG GCGGACTTGC CCGCGTGCTG GAGCTGCCGG AGACCGGCTG GCTGCGCCGC
TACCGCGTGC GCGCCAATGG CGAGGTCAAC CAGGCCCAGC TCGACAGCCT GCTGAAGGGC
ATCACCGTCG ATGGGGTGGA GTACGGCCCC ATCGAGGCGG AGCTGGACCG GGTGCAGGGC
GCCAATGCCT GGATCACGGT GTCCCTGCGC GAGGGCAAGA ACCGGGAAAT CCGCAATGTG
TTCGGCGCCT TGGGCCTCCA GGTGAACCGG CTGATCCGCG TCTCCTACGG CCCGTTCCAG
CTGGGCGATG TCCCGGAAGG TGGCATCGAG GAGGTGCGCA CCCGCGTGCT GCGCGACCAG
ATCGGCAACG ACCTCGCCGC CGCCGCAGGA GCCGATTTCA CCGGCCTGCT GGTGGAGCGC
GAGCTGGAAG AGGCCCCGCC CCGCGTGGCA CTGCGCCCCG CCGGCAAGCG TCAGGCTGCA
GCCGAGAAGG GCGGCACCCT GAAGGCGCCG GCCCGCCGTT CGCGGCAGGA CGAGGATTTC
GACGCGCCGG TGGAGGATGT CATCCGCCCC GCCGGCCCCC GCACGCGCCG GCGCATGAGC
GATGAAAATG CCGTGGAGAG CCGTGGCTCG GTGGCCGACC GCAAGGGCCG CACGGTGAAG
GTGGAACGCG TGGTGGCGCC CAAGGCAGAC GCCCCGACGC GTGGCGCCCG AACTGGTGCC
CGGCCCGGTG CCCGCAAGAG CGACAGGGAC GAAGCAGGAG CCCGCCCGTT CCGCCGCGGT
CCGGCCGAGG GCAAGGAGCG CTTTTCCGAG CGCGGACCAG CCCGCGCCGG TTTCCGCGAC
GATGCCCGTG GCCCGCGCCG CGAGCGCGAT GATCGCGAGG ATTTCCGTCG CCGTCCCACC
CGGGAGGGAG AGGATCGCCC CCGTCGCCCG CGTCCGGAGA CAGCGGATGG CGCCCCCCGG
CGCGGCCGCG ACGAGCGCCC GCAGCAGGGC GAGCGGCCCT TCCGCACCCG CAGCGAACGG
CCGGACCGCA CCAGCGAGCA GGAGGGCCGG CCCGCCCGTG GCGGCAGCCG TCCTTATGGC
GACAAGCCGG CGGGGCGTGC CCGTCCGACG GGTGACCGGC CGGCGGGTGC TGGCCGCGCT
TACGGCGAGA AATCCGAAGG CTCGGGTCGC GCTTATGGCG ACAAGCCGGC GCGGAGCCGC
CCCTCCGGTG ACAGGCCCAC GGGCGGCGCT GGTCGCTCCT ACAGCGAACG CTCGTCCGAA
GGTGCGGGTC GCGCTTTCGG CGACAAGCCG GCCGGCGCGC GCAGTTTCGG CGGCAAGCCG
GGGGGCAAGC CCGGCGCCGG TCGTGGCGGC TTCGGTGGCA AGCCCGGCGG AAAGCCCGGC
GGGCGCGCGG GCGGTGGCAA GGCTGGCGGC GGCAAGCCTG CGGGTCCGCG CGGCAAGCGC
TGA
|
|---|
| Protein sequence | MPRTSPPRKD KNRVPRIKRE LTPAAPKEAE RIAKVVARAG LGSRREIEEW IEAGRVAVNG
EVLTTPAVTV TAEDAITVDG APLPERERTR LFIYHKPRGV VTTNRDPEGR TTLFEILPQG
LPRLVSVGRL DLNSEGLLLL TNDGGLARVL ELPETGWLRR YRVRANGEVN QAQLDSLLKG
ITVDGVEYGP IEAELDRVQG ANAWITVSLR EGKNREIRNV FGALGLQVNR LIRVSYGPFQ
LGDVPEGGIE EVRTRVLRDQ IGNDLAAAAG ADFTGLLVER ELEEAPPRVA LRPAGKRQAA
AEKGGTLKAP ARRSRQDEDF DAPVEDVIRP AGPRTRRRMS DENAVESRGS VADRKGRTVK
VERVVAPKAD APTRGARTGA RPGARKSDRD EAGARPFRRG PAEGKERFSE RGPARAGFRD
DARGPRRERD DREDFRRRPT REGEDRPRRP RPETADGAPR RGRDERPQQG ERPFRTRSER
PDRTSEQEGR PARGGSRPYG DKPAGRARPT GDRPAGAGRA YGEKSEGSGR AYGDKPARSR
PSGDRPTGGA GRSYSERSSE GAGRAFGDKP AGARSFGGKP GGKPGAGRGG FGGKPGGKPG
GRAGGGKAGG GKPAGPRGKR
|
|---|
| |