| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6309 |
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| Symbol | |
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| ID | 7975631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1046945 |
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| End bp | 1047970 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796879 |
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| Product | Rieske (2Fe-2S) domain protein |
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| Protein accession | YP_002948138 |
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| Protein GI | 239820953 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.241664 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGGTTC GAAACTGCTG GTACGTCATT GCGTGGGATC ACGAAATTTC CGACGACGCG
CTGTTCACGC GCACGGTGCT CGACGAGCCG ATCCTGGTCT ATAGAACCGA GGGCGGCGAG
CTCGTGGCGA TGCAGGACCG CTGCTGCCAC CGGCATGCGC CGCTGTCGCG CGGACGCAGG
GAAGGCGACT GCGTGCGCTG CGGCTACCAC GGCCTCAAGT TCGCCGCCGA CGGCGTTTGC
GTGGAGGCAC CGGGGCTGGC CAGCATTCCC GTGAAGGCGC GCGTGCGGAC CTACCCGGTG
GTCTCGCACA ACAAGTGGAT CTTCGTGTGG ATGGGTGATC CGTCGCTCGC GGATCGCGCG
CTGCTGCCGG ACAACTTCTC GTGCGACCAC CCCGACTGGC GCTACAGGCC CGGCTATGTC
CACTACGACA CGCCCTACCT GCTGGTCTGC GACAACCTGC TGGACTTCTC GCACCTGAGC
TATGTGCATG AAGGCACGCT GGGCGGATCG ACGGCCATCG CCCAGGCCGT GCCCAGGATC
GAGAAGGTGC CGCGCGGCAT CCGCGTGACG CGGCACGTGC CCGACGTGCC CCCGTCTCCC
TTCTGGAAGT CGTTCCAGAG TTTCGAGAGC AACGTCGACC GCTACTTCAT CTACGACTTC
CTCCTGCCCG GCACCTTGCT GATGAAGTCG GGCGGCGCGC CGGTGGGGCA GGCCGAAGAC
GAGCAGCGCG GCGGCGTGCA GCTGCACAGT TGCCAGGCGC TCACGCCCGA GACCGCAACG
ACCACGCACT ACTTCTTCCA GCAGTCGCAC CGAAGCAGCA TCGCGGACCC CGCGGTCACC
GAGACCATCT ACCGCGGCCT GGTCACCGCG TTCGAGGAAG ACCGCGAAAT GATCACCGCG
CAGTACCTGA ACATCGATCC CGAAGCGCGC ATGCTGCCGC TCGCGATGGA CGCCGCGCTG
GTGCAGTACC GGCGGCTGCT GCAGGAAGAG GTCGAGCGCG AGCAGCGCGC CTCGCAGGCC
GGCTGA
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| Protein sequence | MWVRNCWYVI AWDHEISDDA LFTRTVLDEP ILVYRTEGGE LVAMQDRCCH RHAPLSRGRR
EGDCVRCGYH GLKFAADGVC VEAPGLASIP VKARVRTYPV VSHNKWIFVW MGDPSLADRA
LLPDNFSCDH PDWRYRPGYV HYDTPYLLVC DNLLDFSHLS YVHEGTLGGS TAIAQAVPRI
EKVPRGIRVT RHVPDVPPSP FWKSFQSFES NVDRYFIYDF LLPGTLLMKS GGAPVGQAED
EQRGGVQLHS CQALTPETAT TTHYFFQQSH RSSIADPAVT ETIYRGLVTA FEEDREMITA
QYLNIDPEAR MLPLAMDAAL VQYRRLLQEE VEREQRASQA G
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