Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6199 |
Symbol | |
ID | 7975089 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 930727 |
End bp | 931653 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644796769 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002948028 |
Protein GI | 239820843 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.2151 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCGACAG AAGCCGACCT GAACCTGCTG TTTGCGTTGA ACGCACTTCT CTCCGAAGGC AGCGTCGCCA AAGCTGCCGA GCGCCTGGAC CTGAGCGAGT CGGCGATGAG CCGGGCGCTC GCGCGGCTGC GGGAATCCAC CGGGGACCAG CTCCTCGTGC GCGCGGGCCG CGCCATGGTG CTCACGCCGC ATGCGCTGGC ATTGCGCGAC CGCGTCAGGG AACTGGTGCA GGAGTCGCGC GCGGTGCTTC AGCCCGCCGG CGCGAGCATG GACCCCCGCA CGCTCCGGCA CCTGTTCACG ATACGGGCCA ACGACGGCTT CATCGAGGGC TTCGCGCCCC AGCTGGTGGC CCGCGCCGCG CGCGAGGCGC CGGGCGTTCG CCTGCGCTTT GCGCCCAAGC CCGACAAGGA TGTCCGGCCT CTGCGCGAGG GATTGCTCGA TCTGGACATC GGCGTTCTGG GCGAGTCGGG CCCGGAGGTC CGCGTCCAGG CGCTCTTTCG CGACCGCTTC ATTGCGGTGG TGCGCGATGG CCATCCCCTG CTCGCCGGAC CCGAGATCAC GGCCGAGCGC TACGCTGCCT GCGACCACGT GGTCACTTCA CGCCACGGCC GGACCGTGGG GCCGGCGGAC GACGCACTCG CGGCAATGGG CCTGGTGCGC AACACCGCGG TCGTGGTGCC CAGCTTCGGC ACTGCCTTGT CGATAGCGGC CGCGACCGAC CTGGTTGCAT TGATACCGTC TTCCTACTTC GAACACCTGA GGGCGCGCGG CACGCTGCGC TCGTTCCCGC TGCCGATGCC GACCGAGCAG ATCACCGTGT CGCAGATGTG GCACCCGCGC CTGGATCGGG ACCCTGCGCA CCAGTGGCTG CGCGGGTTGG TGCTGGAGGT TTGCCGGCCA CTGAACGAGC GGACAAGCGC GTCGTGA
|
Protein sequence | MPTEADLNLL FALNALLSEG SVAKAAERLD LSESAMSRAL ARLRESTGDQ LLVRAGRAMV LTPHALALRD RVRELVQESR AVLQPAGASM DPRTLRHLFT IRANDGFIEG FAPQLVARAA REAPGVRLRF APKPDKDVRP LREGLLDLDI GVLGESGPEV RVQALFRDRF IAVVRDGHPL LAGPEITAER YAACDHVVTS RHGRTVGPAD DALAAMGLVR NTAVVVPSFG TALSIAAATD LVALIPSSYF EHLRARGTLR SFPLPMPTEQ ITVSQMWHPR LDRDPAHQWL RGLVLEVCRP LNERTSAS
|
| |