Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6193 |
Symbol | |
ID | 7975083 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 926264 |
End bp | 927250 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644796763 |
Product | hypothetical protein |
Protein accession | YP_002948022 |
Protein GI | 239820837 |
COG category | [S] Function unknown |
COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.943735 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCCGCT CCCTTCGCCT GGCCGGCAGC CTTGCCGCCT TCTGCGCCGG CTTGCTGGCC GCACCTGGTG CTGCCGCCCA GCCGTTTCCG AGCCGCCCGG TCACGCTGAT CGTTCCTTTC CCCGCCGGCG GTCCCAGCGA TGCACTGGCC CGCGCCGTCG CGCAGAAGAT GGCAGCGCCG CTGGGCCAGC CCATCGTCAT CGAGAACCTC GGCGGCGCTA ACGGCGTCAT CGGCCTGGCG AAGGCGACCA AGGCCGCCGC CGACGGCTAC ACCATCTCGT TCGGAGGCAT CGGCACGCAC GTGGCCAACC TCGCGCTGTA CAAGAAGCTG GCCTACGACC CCGTCGCCGA TTTCGCGCCC ATCGGCCCCG CGGGCGCGGC ACCGATGCTG CTGCTGGCCC GCGCCGACCT GCCGGCCAAC GATCTGCGCG AGTTCAGCGC CTGGCTGGCG AAGCACAAGG ACAAGGCCTC CTACGGCAGC GCGGGCGTGG GGTCGATCTC GCACTACGGC TGCGTGCTGT TGCTGTCTTC CCTCGGCCAG AACGCCACGC ATGTGCCCTA CAAGGGCGTT GCGCCGGCGG TCAACGACCT GATGGGCGGG CAGACCGATT TCATGTGCGA CCAGACCACC ACCGCATTGC CGCAGATCGC CGGCGGGCGC ATCAAGGCCA TCGCCGTGCT GTCGGGCACG CGCCTCGTGC AGTTGCCGCG TGCAGCCACC GCGGCGGAAG GCGGCCATGC GCTGGACGTG CGTTCCTGGA ATGCCTTCTT CGCCCCGCGC GGCACGCCGC CGCCCGTGCT TGCCAGGCTG ACCGGCGCAC TGCAGCAGGC GGTGGCCGAT CCGGCGCTGC GCAAGCAGAT GGAAGGGCTG GGCGTCGACC TGCCCGCACC TGCCGATGCA ACGCCCGCGA CCGTCGCCGC GCTCATTGCG CGCGGCATCC GCGACGACGT GCCGGCCCTC AAGGCCAAGG GCCAATACCT GGACTGA
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Protein sequence | MIRSLRLAGS LAAFCAGLLA APGAAAQPFP SRPVTLIVPF PAGGPSDALA RAVAQKMAAP LGQPIVIENL GGANGVIGLA KATKAAADGY TISFGGIGTH VANLALYKKL AYDPVADFAP IGPAGAAPML LLARADLPAN DLREFSAWLA KHKDKASYGS AGVGSISHYG CVLLLSSLGQ NATHVPYKGV APAVNDLMGG QTDFMCDQTT TALPQIAGGR IKAIAVLSGT RLVQLPRAAT AAEGGHALDV RSWNAFFAPR GTPPPVLARL TGALQQAVAD PALRKQMEGL GVDLPAPADA TPATVAALIA RGIRDDVPAL KAKGQYLD
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