| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6192 |
|---|
| Symbol | |
|---|
| ID | 7975082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 925562 |
|---|
| End bp | 926236 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644796762 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) |
|---|
| Protein accession | YP_002948021 |
|---|
| Protein GI | 239820836 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.544063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAACA CTTCGACTCC CAACACCGCG GCCGGGCGCT ATCCCCGGGC CGTGCTGTTC
GACCTGCTCA CTGCGCTGCT CGATTCGTGG ACCGTCTGGA ACGCAGCCGC CGGTTCCGAG
CAGATGGGCC GCGCCTGGCG CGCCGAATAC CTGCGGCTCA CCTATGGCTG CGGCGCCTAC
CTGCCCTACG AAGACCTGGT GCGGCAGGCC GCGGCCACCG TGGGGTTGCC CGCGAGCGCC
CCGCAGTCGC TGGACGACCA TTGGGACGAG CTGCCCGCAT GGAGCGGCGC CACCGAACTG
CTGCGGGCGC TTCGGCCCCA CTGCAAGCTG GCCGTGGTGA CCAACTGCTC GCGGCGCCTG
GGCCAACGCG CGGCCGAACG CCTGGGAATC GACTGGGACG TGGTCGTGAC CTCCGAGGAG
GCGGGCTTCT ACAAACCCGA TCCCAGGCCC TATCGGCTGG CCCTGGAGCG GCTGGGCGTG
CAGCCGGCCG AGGCGGCCTT CGTTGCCGGA TCAGGCTACG ACATGTTCGG CACGGCCAGC
GTCGGCCTGC GCACTTATTG GCACAACCGC GTCGGCCTGG CCCGGCCCGA GGGCGCGCCG
CTGGCGGAGG TCGAGTCGCC CACGCTCGAT GGTGCGCTGC CATGGCTGCG CGGCTTCCGA
CCGGCCGCTT CCTGA
|
|---|
| Protein sequence | MQNTSTPNTA AGRYPRAVLF DLLTALLDSW TVWNAAAGSE QMGRAWRAEY LRLTYGCGAY
LPYEDLVRQA AATVGLPASA PQSLDDHWDE LPAWSGATEL LRALRPHCKL AVVTNCSRRL
GQRAAERLGI DWDVVVTSEE AGFYKPDPRP YRLALERLGV QPAEAAFVAG SGYDMFGTAS
VGLRTYWHNR VGLARPEGAP LAEVESPTLD GALPWLRGFR PAAS
|
|---|
| |