| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6179 |
|---|
| Symbol | |
|---|
| ID | 7975069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 910511 |
|---|
| End bp | 911482 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644796749 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002948008 |
|---|
| Protein GI | 239820823 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTCA TCAAGATCGT CATCGCGGCC GCGGCCCTCG CCTGCAGCGG CTTTTCATCG
GCCCAGAGCT ACCCCACCAG GCCGGTGACC CTGGTGGTGC CGGCCGCGCC CGGCGGGGGA
ACGGACATTC TGGGCAGGGT GTTTGCCGAA CAGCTCAAGA AGCGGCTGAA CCAGCCGGTG
CTTGTGGACA ACAGGGCAGG CGCCTCAGGA ATGATCGGAA CGCAAGCGGT TGCCAAGGCA
GCCCCGGATG GCCATACCTT GCTGTTCACC TATTCGTCGC CGATCTACTA CGCGCAGCAC
ACCTTCAACA ACGTTCCATA CGACGTCAAG CGCGATCTGG CGGTGATCTC GGAGGTTGCG
ACCAACACGA TGATCCTTGT GGTGAACAAG GATGTGCCCG CAAGGAACAT GAAGGAGTTC
ATTGCATGGG CAAGAAAGGA GAAGGGACAT CTCAGCTACG GATCCCTTGG CACAGGCTCG
GGTGGGCATC TCACGGCAGC GTACCTGAGC AAGACTCAAG ACCTTGATAT GGTCCACGTG
CCCTACAAGA GCGAGGCGCC TTTTGCCCAG GATCTTGCGG CGGGAATGGT GCCCTGGGGA
ATGGGAACGC TCGCGCCCAT GCTTCCACTG ATCCAAAGCG GCAGGGTGCG GCCGATTGCG
GTTCTTTCCG AGAAGCGCCT GCAGGGGTTG CCCAACGTGC CGACCATGAA AGAGGAAGGC
TTCCCTGATC CCGAGCTTGT GACCATGTCT TGGTTCGTGC TGGCGGCTCC CGCAGGAACG
CCAAAGCCGG TCCTCGAACT GCTCGAGAAA CACGCACGCG AAATAGCGCA TACCCCCGCG
ATGAAGGCAA GGCTGGAGGA GCTGGGGATG GACGCTGTTG GCGGCAGTGC AGCCGACTTT
CGTCGCAACT TCGATGCCAC GGGGCCTCTC ATCGAGAAGC TCGTGAAGAT CTCGGGCGCT
CGAAACGAAT AG
|
|---|
| Protein sequence | MQFIKIVIAA AALACSGFSS AQSYPTRPVT LVVPAAPGGG TDILGRVFAE QLKKRLNQPV
LVDNRAGASG MIGTQAVAKA APDGHTLLFT YSSPIYYAQH TFNNVPYDVK RDLAVISEVA
TNTMILVVNK DVPARNMKEF IAWARKEKGH LSYGSLGTGS GGHLTAAYLS KTQDLDMVHV
PYKSEAPFAQ DLAAGMVPWG MGTLAPMLPL IQSGRVRPIA VLSEKRLQGL PNVPTMKEEG
FPDPELVTMS WFVLAAPAGT PKPVLELLEK HAREIAHTPA MKARLEELGM DAVGGSAADF
RRNFDATGPL IEKLVKISGA RNE
|
|---|
| |