| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6127 |
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| Symbol | |
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| ID | 7975573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 848328 |
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| End bp | 849278 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796683 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947957 |
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| Protein GI | 239820772 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCGCC TCGAAAACAT TGAGACCTTC GTAAGGGTCG CGCAGACCCA GAGCTTCGCC
GAGGCCGCGC GCCAGCTGCG GGTCTCCAAG TCGGTCGTGA CCAGCCGCGT GAAGCAGCTG
GAAGACCATG TCGGCGCGCC GCTGTTCCAC CGCAGCACGC GCGTGGTGCG GCTCAGCGAT
GTCGGGCAGG CCTTCCTGCG CGACTGCGTC GAGCTGGTCG GCCGGGCCAA CGACATCATG
GACCAGATGC GCGACGCCAA GGACGGACCC ACCGGCACCT TGCGCGTGCA TGCGCTCACC
GGCTTCGTGC TCGGGCATTT CGCGACGCTG CTGCGGGCCT TCCAGTCGAG CTTTCCGGAC
ATCCACCTCG AACTCATCGT GAGCGATGCG GTGGTCGATC CGGTGAAGGC GGGGGTGGAC
TGCGCGCTTC AGATCTTTCC GGCAGCCTCG ACCGAGCTGG TGTCGCGCTC GCTGTTCCCG
GTGCGCCGGG TGTTCTGCGC CACGCCCGAG TACCTGCGCG CGCACGGCAG GCCCGCGAGC
CCGCGCGAGC TGCACAAGCA CACGCTCGGC CTGTACTCGG GCTACCCGAC GCGCGACCGC
TGGACCTTCC ACCACGGCGG CGAGCAGGTG ACGATGTACA TGAGCGCCGC ACTGCTCACC
AACAGCGTCC ACCTGCTGCG CGAATACGCC ATGGAGCATG CCGGCATCGT CTGCCTGCCG
ACGCTGGTGG CGGGCGAGGC GATCCTGCGC GGCGAGCTGG AGGTGGTGCT GCCGGCGCAC
CAGCTCTCGT CGTTCTCGCT GAGCGCGGTG TATGCGGGCA CCTCGCGCAA TGCGTTCAAG
CTGCGGCTCT TCATCGAGCA CCTGACCCAT GCCTTCTCCA AGGTGCCGCC GTGGGACGCG
GCCATGATCG AACGGGGCCT GCTGCCGCCC AGCCTGATCT GGGACGCCTG A
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| Protein sequence | MDRLENIETF VRVAQTQSFA EAARQLRVSK SVVTSRVKQL EDHVGAPLFH RSTRVVRLSD
VGQAFLRDCV ELVGRANDIM DQMRDAKDGP TGTLRVHALT GFVLGHFATL LRAFQSSFPD
IHLELIVSDA VVDPVKAGVD CALQIFPAAS TELVSRSLFP VRRVFCATPE YLRAHGRPAS
PRELHKHTLG LYSGYPTRDR WTFHHGGEQV TMYMSAALLT NSVHLLREYA MEHAGIVCLP
TLVAGEAILR GELEVVLPAH QLSSFSLSAV YAGTSRNAFK LRLFIEHLTH AFSKVPPWDA
AMIERGLLPP SLIWDA
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