Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_6024 |
Symbol | |
ID | 7975309 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 748546 |
End bp | 749601 |
Gene Length | 1056 bp |
Protein Length | 351 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644796584 |
Product | ribosomal RNA large subunit methyltransferase N |
Protein accession | YP_002947858 |
Protein GI | 239820673 |
COG category | [R] General function prediction only |
COG ID | [COG0820] Predicted Fe-S-cluster redox enzyme |
TIGRFAM ID | [TIGR00048] radical SAM enzyme, Cfr family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0838291 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAATCC ACGAACTGAA ACAGCGGCTG CGGGAAGCCG GTGCAGGCCC CAGCCACGAG CAGCGCATCC TGCGGCTGTG GTCCCACGCA CTGCCGCGCA ACAGCGGCCG GCGCCTGCCG GAGAGCTTCT TTCCGTCGTC GCTGCTGGCG GCCCTGCCCG CCATCGAAGC GGAGCTGGCA GGCCTGGCGC GCATCCACGC GGTGCATCCC GGCGCCGATG GCTCCGAGCG GCTGCTGGTC GCGCTGGCGG ACGGGCAGAC GGTGGAGAGC GTGCTGCTGC CGCGCGACGG GCTTTGCGTC TCGTCGCAGG TGGGCTGCGC GGTCGGATGC CGGTTCTGCA TGACGGGCCG CGACGGGTTG CTGCGCCAGG TGGGCAGCGC CGAGATCATT GCGCAGGTCG CGCTCGCGCG CATGCGCCGG CCGGTGCGCA AGGTGGTGTT CATGGGCATG GGCGAGCCCG CTCACAACCT GGACAACGTG ATGGAGGCGA TCGAGCTGCT CGGCACGGTG GGCAACATCG GCCACAAGAA CCTGGTGTTC TCGACCGTGG GCGATCCGCG CGCGTTCGAG AGGCTGCAGC AGGCGCGTGT CAGGCCCGCG CTGGCGCTCT CCTTGCACAC CACCAAGGCC GGCCTGCGCA AGAAGCTGCT GCCGCGCGCG CCGAACATGA CGCCCGAGGA ACTGGTCGGC GCAGGCGAGC GCTACGCCCG GGCCACCGGC TATCCGATCC AGTACCAGTG GACGCTGCTG GACGGCGTCA ACGACGGGCC CGAGGAGATC GACGGCATCG TGAGGCTGCT CTCCGGCAAG TTCGGCGTGC TGAACATGAT CCCCTTCAAC GCCGTGGAGG GCGTGGCCTT CAGCCGTCCG TCGCTGGAGC GCTGCGAACA GATGGCGCGC ACGCTGCACC AGCGCGGCAT CCTGACCAAG CTGCGCCATT CGGCCGGCCA GGATGTCGAC GGCGGCTGCG GCCAGCTGCG GGCGCGCGCG GCCGAGGCAA GGGTGGTGCC GATTCGGTTC GCTCAGCCGA GCGAGGCCAC CCAATCCCAG ACCTGA
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Protein sequence | MRIHELKQRL REAGAGPSHE QRILRLWSHA LPRNSGRRLP ESFFPSSLLA ALPAIEAELA GLARIHAVHP GADGSERLLV ALADGQTVES VLLPRDGLCV SSQVGCAVGC RFCMTGRDGL LRQVGSAEII AQVALARMRR PVRKVVFMGM GEPAHNLDNV MEAIELLGTV GNIGHKNLVF STVGDPRAFE RLQQARVRPA LALSLHTTKA GLRKKLLPRA PNMTPEELVG AGERYARATG YPIQYQWTLL DGVNDGPEEI DGIVRLLSGK FGVLNMIPFN AVEGVAFSRP SLERCEQMAR TLHQRGILTK LRHSAGQDVD GGCGQLRARA AEARVVPIRF AQPSEATQSQ T
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