Gene Vapar_5959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5959 
Symbol 
ID7974998 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp677728 
End bp685431 
Gene Length7704 bp 
Protein Length2567 aa 
Translation table11 
GC content66% 
IMG OID644796523 
Productouter membrane adhesin like proteiin 
Protein accessionYP_002947797 
Protein GI239820612 
COG category 
COG ID 
TIGRFAM ID[TIGR01965] VCBS repeat 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.33422 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACCA TTACCGGCTC CAACGGCAAC GACCTTCTCA CCGGCACGGC CGGCAGCGAC 
ACCATCAACA GCGGCAACGG GGACGACAGC GTCAGCGGCG GAGCCGGGAA CGATTCATTG
AATGGCGGCG CGGGAAACGA CACGCTCGAT GGCGGCAGCG GTAGTGACCA GCTCAACGGA
GGATCGGGGG CCGACACCCT GATCTACAAC GTCAGCGAAA ACGCCGCAGC GGGCACCAGC
GACGTGTACA CCGGCGGGGC GGGTGTCGAT ACGCTCCAGC TCCAGTTCAC GCGGACCCAG
TGGCTGGAGG CTTCCACCCA GACGCAGATC GCTGCCTATC TGACCCATCT TGCGGCAGTG
ACCAACGCGA GAACTGGAGA GGTTTCCAAT GGCTCGGCCA GCGATTTCGT TTTCAGCTTC
GGGTCGTCCA CGCTGACCGT CCAGATGACT GAAGTCCTGA GAGTCTTCGT GGACGGGGTA
GAGGTGAATC CGGCCAACGA GGCGGTGAAG GCGCTGGGCG ATACGGGCGC GACGACCGAA
GACGGCTCGG GGATCCAAGT CCACGTGCTG CAGAACGATC TGGTCCCCGA CTTGGTCAAG
AGCTTGGCGC TGGCCTCGGC GCCGGCCCAC GGGACGGCGA CGCTCGTTCA ACCGGCGATG
GGCGATCCGT CGACCTGGTA TTTCCAGTAC CAGCCCCATA CAGCCGATTT TCAATACTTG
GCAGCGGGCG AGAGCGCAAC CGACACCTTC AGCTACGAGG TGATGGACGC CGATGGTGGT
AGGGGACTGG CCGCAGTGAC CATCACCATC ACCGGCGCCA ACGATGGTCC GGTGATCACA
GCCCAGGACC TGGCGGGTGC GGTGAGCGAG CAGGTTGCGC CGGCGGGCAA TTTGAGCGAC
AGCGGCGTTA TCGGCTTCAG TGACCTGGAC CTGAGCGATG TGCACTTGGT GAGCGCCACC
GGCACGCCGG TCGGCAGTGT GCTGGGAAGC CTGACAGCGG TCAGGAGCGG CGACACCACG
GGGACCGGTA CTGGCGGCCA GATCACCTGG ACTTACACCG TGGATGCCGC GGCGGTCGAG
TACCTGGCCG CTGGTCAGAT CCGGGTCGAG AGCTTCACTA TCACGGTGAA CGATCAGCAT
GGCGGCATCG TCACTCGGCA GATCGACGTG ACCATCACCG GCACCAACGA CGCGCCGACG
ATTGGTACAG CCGATGCCGC TGCGGCGGTG ACCGAGGATG CGGCGACGCC GACCCTGGGC
GACAGCGGCA CGATCACCTT CGACGACGTG GACCTGAGCG ATGCGCACAG CGTCAGCGTG
GCGGCCGGTC CAGGCAACAC GCTGGGCGGT GTCTTGACGG CTGGCGTCAG CGATGCGGCC
ACGGGCGCGG GCGACGGCAC GGTGACGTGG AACTACAGCG TTGCCAACGC GGCCACTCAG
TATCTGGCCC AGGGCCAGAC GGCGACGGAG ACCTTCACCG TCAGCATCGC CGATGGCCAC
GGCGGCACGG TCCAGCAGCA GATCACTGTG ACGGTGACGG GGACCAACGA CGTGCCGGTG
ATCGGCGGCA TTGCCGCCGG CACGGTGAGC GAGGATGCCT CGACGCCGAA CCTGAGCACC
AGCGGTGCAT TGACGATCGC CGATGTCGAC CAGGGCCAGT CGAACTTCGC ACCCCAAACC
AGCGTTCCTG GCAGCAACGG CCACGGCAAC TTCACGCTGG CGGCCGACGG CAGCTGGACC
TACACGGCCG ACAACAGCCA AAACGCCATC CAGCAGCTGG GCGCCGGCCA GTCTATCAGC
GATAGCTTCA CTGCCGTGTC TTCCGACGGC ACAGCCAGTC AGATAGTGAC GGTGACGATC
ACCGGCACCA ACGACGTGCC GGTGATCGGC GGCGTCGCCA GCGGTGCGGT GAGCGAGGAT
GCATCGACGC CGAACCTGAG CACCGGCGGT GCATTGACGA TTGCCGATGT CGACCAGGGT
CAATCGAACT TCGCGCCTCA AGCGAGCACC GCTGGCAGCA ACGGCCACGG CAGCTTCACG
CTGGCGGCCG ATGGCAGCTG GACCTATACG GCCGACAACA GCCAGAGCGC GATTCAGCAG
CTTGGTGCAG GTCAATCAAT CAGCGACAGC TTCACCGCGG TGTCGTCGGA TGGCACCGCC
AGCGAGGTGG TGACCGTGAC GATTACCGGC ACCAACGACG TGCCGGTGAT CGGTGGAGTC
GCCACCGGCG CGGTGAGCGA GGATGCCTCG ACGCCGAACC TGAGCACCAG TGGTGCGCTG
ACGATTGCCG ATGTCGACCA GGGTCAATCG AACTTCGCGC CACAAGCGAG CACTGCCGGC
AGCAATGGCT ACGGCAGCTT CAACTTGCTG GCTGATGGCA GCTGGAGCTA CACGGCCGAC
AACAGCCAGG CAGCGGTCCA GCAGTTGGGT GCCGGCGAGT CGATCAGCGA CAGTTTCACT
GCAGTCTCGT CCGATGGAAC GGCCAGCCAG CTCGTGACGG TGACGATCAC CGGGACCAAC
GACGTGCCGG TGATCGGCGG CGTCGCCAGC GGCGCGGTGA CCGAGGATGC CTCGACACCA
AACCTGAGCA CCGGCGGTGC GTTAACGATT GCCGATGTCG ACCAAGGCCA GTCCAGCCTC
ACAGCCCAGG CCGGCACTGC CGGCAGCAAC GGCTACGGCA GCTTCAACTT GCTGGCTGAT
GGCACTTGGG CCTACACGGC CGACAACAGC CAAAGCGCGA TCCAGCAGCT GGGTGCCGGC
CAGTCGCTCA GCGACAGCTT TACTGCCGTC TCGTCCGATG GAACGGCCAG CCAACTCGTG
ACGGTGACCA TCACCGGGAC CAACGATGTG CCGGTGATCG GCGGCGTCGC CAGCGGCGCG
CTGAGCGAGG ATGACTCGAC TCCGAACCTG AGCACCGGCG GTGCGTTGAC GATCGCCGAT
GTCGACCAAG GCCAGTCCAG CTTCACAGCC CAGGCCGGCA CAGCCGGCAG CAACGCCTAT
GGCAGCTTCA CGCTCGCGGC CGACGGCAAC TGGATCTACA CCGCCGACAA CAGCCAGGCA
GCGATCCAGC AACTGGGTGC CGGGGAGTCG CTCAGCGACA GCTTCACCGC AGTGTCCTTC
GACGGCACGG CCAGCCAACT CGTGACAGTG ACGATCACTG GCACCAACGA TGTACCTGTG
ATTGGTGGTG TCGCCACCGG CGCGGCGAGC GAGGATGCCT CGACGCCGAA CCTGAGCACC
GGTGGCGCGC TGACGATCGC CGATGTGGAT GCGGGCCAGT CGAACTTCGC GCCTCAAGCA
AGCACCGCCG GCAGCGGCGG CTACGGCAGC TTCACGCTGG CGGCCGACGG CACTTGGACT
TATGCGGCCG ACAACAGCCA GGCAGCGATC CAGCAGTTGG GCGCCGGCGA GGCGATCAGC
GACAGTTTCA CGGCGGTGTC GTTCGATGGG ACGGCCAGCC AACTCGTGAC TGTGACCATC
ACCGGGACCA ATGACGTTCC GGTGATTGGC GGCGTAGTCA GCGGCGCGGT ACAAGAAGAC
GTTGCGGTGT CCGGTGGCAG CCTCGCGGCC AGTGGGGCGC TGACGATCGC CGATGTGGAT
GCCGGCCAGT CGAACTTTGC GCCTCAAGCG AGCACTGCCA GCAGCAATGG CTATGGCAGC
TTCACGCTCG CGGCCGGCGG CACTTGGACT TATGCGGCTG ACAACAACCA AAGCACGATC
CAGCAACTTG GCGTCGGTCA ATCGATCAGC GACAGCTTCA CCGCCGTGTC CTCTGACGGC
ACGGCCAGCC AGCTCGTGAC CGTGACCATT GCCGGGACCA ACGATGTACC GGTGATCGGT
GGCGTTGCCA CCGGCGCGGT GAGCGAGGAT GCCTCGACGC CGAACCTGAG CACCAGTGGT
GCGCTGACGA TTGCCGATGT CGACCAGGGT CAGTCCAACT TCACGCCCCA GGCCGGCACC
ACCGGCGGCA ACGGCTACGG CAATTTCACG CTGGCGGCCG ATGGCAGCTG GACCTACACG
GCCAACAACA GCCAGGCGGC GATCCAGCAG TTGGGCGCCG GCGAGTCGGT CAGCGATAGC
TTCACTGCTG TGTCGTCCGA CGGTACGGCC AGCCAGCTCG TGACGGTGAC GATCACTGGC
ACCAATGACG TGCCGGTCAT CGGCGGCGTC GCCAGCGGCG CGGTGCAAGA AGATATTGCG
GTGGCGGGGG GCAGCCTCGC GGCCAGCGGG GCGTTGACGA TCGTCGATGT AGATGCCGGC
CAGTCGAACT TCGCGCCCCA AGCGAGTGCC GGCGGCAGCA ACGGCTACGG CAGCTTCACA
TTGGCGGCCG ACGGCAACTG GAGCTACACG GCCGACAACA GCCAGGCAGC AATCCAACAG
CTGGCCGCAG GTCAATCGCT CAGCGACAGT TTCACGGCAG TGTCGTCCGA TGCGACGGCC
AGCCAGGTGG TGACGGTGAC CATTACCGGG ACCAACGATG TGCCGGTCAT CGGCGGCGTC
GCCAGCGGCG CGGCGCAAGA AGATATTGCG GTGGCGGGGG GCAGCCTTGC GGCCAGCGGC
GCGCTGACGA TCGCCGATGT GGATGCAGGA CAGTCCAGTT TTGCAGCCCA GGCCGGCACC
GCCGGCAGCA ATGGCTACGG CAGTTTCGCG CTGGCAACCG ACGGCAACTG GACCTACACG
GCCGACAACA GCCAAAGCGC GATCCAGCAG CTGGGCGCGG GTCAATCGAT CAACGACAGG
TTCACCGCGG TGTCGTCGGA TGGCACCGCC AGCCGGGTGG TGACCGTGAC CATTACCGGG
ACCAACGACG TGCCGGCGAT CGGTGGCGTG GCCAGCGGGG CGGTGAGCGA GGACGCCTCG
ACACCGAACC TGAGCACCGG CGGTGCGCTG ACAATTGCCG ATGCCGACCA AGGCCAGTCG
AACTTCGCGC CCCAAGCGAG TGCCGGCGGC AGCAACGGCT ACGGCAGCTT CACGCTGACG
GCCGGCGGCA GCTGGACCTA CACGGCCAAC AACAGCCAGG CGGCGATCCA GCAACTGGGC
GCAGGTCAAT CGATCAACGA CAGCTTCACC GCCGTGTCCT CCGACGGCAC GGCGAGCCAG
CTCGTGACGG TGACGATCAC CGGTACCAAT GACGTGCCGG TCATCGGCGG CGTCGCCAGT
GGCGCGGTGA GCGAGGATGC CTCGACACCG AACCTGAGCA CCGGTGGCGC GCTGACTATC
GCGGATGTGG ATGCGGGCCA GTCGAACTTC GCGCTCCAAG CAGGCACCGC CGGCAGCAAT
GGCTACGGCA GCTTCACGCT GGCGGCCAAT GGCGCCTGGA CCTACACGGC CAACAATGGC
CAGGCGGCGA TCCAACAGCT GGGCGCGGGT CAATCGATCA ACGACAGCTT TACCGCGGTG
TCATCCGACG GCACGGCCAG CCGGGTGGTG ACCGTGACCA TTGCCGGGAC CAACGACGTG
CCAGTGATTG GTGGCGTCGC GAGCGGTGTG GTGAATGAGG ATGCCTCGAC GCCGAACCTG
AGCACCAACG GTGCGCTGAC GATCGCCGAT GTCGACACGG GGCAGTCCAG CTTCACAGCC
CAGGCCGGCA CCGCCGGCAG CAACGGCTAC GGCAGCTTCG CGCTGGCGGC CGATGGCAAC
TGGACCTACA CGGCCAACAA CAGCCAGGCG GCGATCCAGC AGCTGGGCGC CGGCCAGTCG
ATCAGCGACA GCTTCACTGC GGTGTCTTCC GACGGGACAG CCAGCCGGGT GGTGACCGTG
ACCATCGCCG GCACCAACGA TGCACCGGTC CTGGGCTCTG CCGCGACACC CGTCCTGGCG
GCAGCCAACG AGGACGGCGG CGCACCGGTC GGGGCCGTCG GGACGCTCAT ATCGAGCCTG
GTGAACCTGA ATCCGCCAGC CGGCGGCCTC GACAACGTGA CCGACGCGGA CAACGGCGCC
ATCACGGGCA TCGCGTTGAC GGGCGCGAAC GCCACCAACG GAAGCTGGTG GTATTCCACC
AACGGCGGCG CCAACTGGGC GGCGGTGGGG GCGGTGTCGA ACGCGTCCGC ACTGCTGCTG
GCTGCGAACG CGAACACGCG TGTCTACTTC CAGGGGAATT CGAACTTCAA CGGGACGCTC
AGCGATGGCA TCACCTTCCG CGCCTGGGAT CAGACGAGCG GCGCGGCGGG CACCACGGTG
AGCACAGTCA CGAACGGGAA CAGCTCTGCG TTCTCGAGCG CCACCGACAC GGCGAGCATC
ACCGTCAGCG CGGTGAACGA CAATCCGGTC GCCGTGGCCG ACAGGATCAT CGTGTCGGAC
AGCACGCTCG TCACGCTGTC GGCGAACTCG CTGCTCGGCA ACGACACCGA CATCGACGGT
CTCGCCTTGA CAATCACCAG CGTCGGCGGC GCGGTCGGAA TTTCCGGCCT GACCCTGGAC
GCCGCCAACG GCACGATCAG CTTCACCAGC GGCAGCACGG CGGGAGCCAC GGCCGGCAGC
TTCCAGTACA CCGTGTCGGA CGGCGCCGGG GGCACCACCA CGGCGACGGC GACGATCGAC
GTCAGGGCCG TGTCCAGCGG CAACGGCGCC GACACGATCG ATCTCAGCGC GACCGGCACC
TACCAGGCCT CCTTCATCGA TAGCCGCGGC GGCGCCGACA ACCTGACCGG CGGTGCGGGC
GGCGACGTCT TCATCGGCGG GACCGGCAAC GCAGCCGATA CGCTGATCGG CTCTGCCGGC
AACGATCTCC TGATTGGCGG TGACGGCAAC GACACACTGT CGGGCGGCGC CGGCAACGAT
GTGCTGCGTG GTGGCATCGG CAACGGTGAC ACGATGGACG GCGGCGCCGG CAGCGAAGAC
CTGCTGGACT TCTCGGACGG TACCGTGGCA GTCAATTTCA CGCTGGTCCA GAGTGCCGTA
TCGACCGGCA TCGCCAACGG CACCGGCGGG CTCGGCAACA ACGACACCTA CCAGAACATC
GAAGGCGTGA TCGGAACGGG CCTGGCCGAC ACCCTCACCG GCAGCGCCTC GAACGACATC
ATCCGCGGCG GCGCCGGCAA CGACACGCTC GATGGAGCAG GGGGCACCGG TGACCTGCTC
GACTTCTCCG ACGGCACCGC CGGCCTCACG TTCACGCTGA CGCAAAGCAG CAGCACGACA
AGCTTCAATG CCAGCGCCGC CGGGCTCGGC ACCGACGGCT ACAAGAACTT CGAGGGCGTC
ATCGGCACGG CCTTCGGCGA CACGATCACC GGTTCGGCGT CGAACGACCA ATTGCGCGGC
GGCGGCGGCA ACGACGTGAT CAACGGCCTT GCGGGCGACG ACCGCATCGT CGGTGGGGCC
GGCGCCGACA TACTCACCGG CGGCGCGGAC AACGACACCT TCGTCTTCGA CTCGGCACCC
AACGCGGTGG ATTCGGTCAC CGACTTCGAT GCTTCGGGAT CAGCGGCGAG CGGCGACCTG
ATCGAACTGT CGCGCGGGAC GTTCACGGCC CTCACGACCG CCAGCGGAAA CACGCTGTCG
GCGGCCGAGT TTGCGTCCCT GAACGGCGGT GGTGCGGGAG ACACGGTGGG CGCGGGCGTG
CACGTGATCT ACGACAGTGC GACGGGCAAC CTGTACTACG ACACCGACGG CCTGGGCGCC
GCGAACCGCA CGCTGGTGGC GACGTTGGCG CTGAGCAACC CGGCCGACAC CTTCGACAGC
AACGACATCA AGGCCGGCGT GTGA
 
Protein sequence
MTTITGSNGN DLLTGTAGSD TINSGNGDDS VSGGAGNDSL NGGAGNDTLD GGSGSDQLNG 
GSGADTLIYN VSENAAAGTS DVYTGGAGVD TLQLQFTRTQ WLEASTQTQI AAYLTHLAAV
TNARTGEVSN GSASDFVFSF GSSTLTVQMT EVLRVFVDGV EVNPANEAVK ALGDTGATTE
DGSGIQVHVL QNDLVPDLVK SLALASAPAH GTATLVQPAM GDPSTWYFQY QPHTADFQYL
AAGESATDTF SYEVMDADGG RGLAAVTITI TGANDGPVIT AQDLAGAVSE QVAPAGNLSD
SGVIGFSDLD LSDVHLVSAT GTPVGSVLGS LTAVRSGDTT GTGTGGQITW TYTVDAAAVE
YLAAGQIRVE SFTITVNDQH GGIVTRQIDV TITGTNDAPT IGTADAAAAV TEDAATPTLG
DSGTITFDDV DLSDAHSVSV AAGPGNTLGG VLTAGVSDAA TGAGDGTVTW NYSVANAATQ
YLAQGQTATE TFTVSIADGH GGTVQQQITV TVTGTNDVPV IGGIAAGTVS EDASTPNLST
SGALTIADVD QGQSNFAPQT SVPGSNGHGN FTLAADGSWT YTADNSQNAI QQLGAGQSIS
DSFTAVSSDG TASQIVTVTI TGTNDVPVIG GVASGAVSED ASTPNLSTGG ALTIADVDQG
QSNFAPQAST AGSNGHGSFT LAADGSWTYT ADNSQSAIQQ LGAGQSISDS FTAVSSDGTA
SEVVTVTITG TNDVPVIGGV ATGAVSEDAS TPNLSTSGAL TIADVDQGQS NFAPQASTAG
SNGYGSFNLL ADGSWSYTAD NSQAAVQQLG AGESISDSFT AVSSDGTASQ LVTVTITGTN
DVPVIGGVAS GAVTEDASTP NLSTGGALTI ADVDQGQSSL TAQAGTAGSN GYGSFNLLAD
GTWAYTADNS QSAIQQLGAG QSLSDSFTAV SSDGTASQLV TVTITGTNDV PVIGGVASGA
LSEDDSTPNL STGGALTIAD VDQGQSSFTA QAGTAGSNAY GSFTLAADGN WIYTADNSQA
AIQQLGAGES LSDSFTAVSF DGTASQLVTV TITGTNDVPV IGGVATGAAS EDASTPNLST
GGALTIADVD AGQSNFAPQA STAGSGGYGS FTLAADGTWT YAADNSQAAI QQLGAGEAIS
DSFTAVSFDG TASQLVTVTI TGTNDVPVIG GVVSGAVQED VAVSGGSLAA SGALTIADVD
AGQSNFAPQA STASSNGYGS FTLAAGGTWT YAADNNQSTI QQLGVGQSIS DSFTAVSSDG
TASQLVTVTI AGTNDVPVIG GVATGAVSED ASTPNLSTSG ALTIADVDQG QSNFTPQAGT
TGGNGYGNFT LAADGSWTYT ANNSQAAIQQ LGAGESVSDS FTAVSSDGTA SQLVTVTITG
TNDVPVIGGV ASGAVQEDIA VAGGSLAASG ALTIVDVDAG QSNFAPQASA GGSNGYGSFT
LAADGNWSYT ADNSQAAIQQ LAAGQSLSDS FTAVSSDATA SQVVTVTITG TNDVPVIGGV
ASGAAQEDIA VAGGSLAASG ALTIADVDAG QSSFAAQAGT AGSNGYGSFA LATDGNWTYT
ADNSQSAIQQ LGAGQSINDR FTAVSSDGTA SRVVTVTITG TNDVPAIGGV ASGAVSEDAS
TPNLSTGGAL TIADADQGQS NFAPQASAGG SNGYGSFTLT AGGSWTYTAN NSQAAIQQLG
AGQSINDSFT AVSSDGTASQ LVTVTITGTN DVPVIGGVAS GAVSEDASTP NLSTGGALTI
ADVDAGQSNF ALQAGTAGSN GYGSFTLAAN GAWTYTANNG QAAIQQLGAG QSINDSFTAV
SSDGTASRVV TVTIAGTNDV PVIGGVASGV VNEDASTPNL STNGALTIAD VDTGQSSFTA
QAGTAGSNGY GSFALAADGN WTYTANNSQA AIQQLGAGQS ISDSFTAVSS DGTASRVVTV
TIAGTNDAPV LGSAATPVLA AANEDGGAPV GAVGTLISSL VNLNPPAGGL DNVTDADNGA
ITGIALTGAN ATNGSWWYST NGGANWAAVG AVSNASALLL AANANTRVYF QGNSNFNGTL
SDGITFRAWD QTSGAAGTTV STVTNGNSSA FSSATDTASI TVSAVNDNPV AVADRIIVSD
STLVTLSANS LLGNDTDIDG LALTITSVGG AVGISGLTLD AANGTISFTS GSTAGATAGS
FQYTVSDGAG GTTTATATID VRAVSSGNGA DTIDLSATGT YQASFIDSRG GADNLTGGAG
GDVFIGGTGN AADTLIGSAG NDLLIGGDGN DTLSGGAGND VLRGGIGNGD TMDGGAGSED
LLDFSDGTVA VNFTLVQSAV STGIANGTGG LGNNDTYQNI EGVIGTGLAD TLTGSASNDI
IRGGAGNDTL DGAGGTGDLL DFSDGTAGLT FTLTQSSSTT SFNASAAGLG TDGYKNFEGV
IGTAFGDTIT GSASNDQLRG GGGNDVINGL AGDDRIVGGA GADILTGGAD NDTFVFDSAP
NAVDSVTDFD ASGSAASGDL IELSRGTFTA LTTASGNTLS AAEFASLNGG GAGDTVGAGV
HVIYDSATGN LYYDTDGLGA ANRTLVATLA LSNPADTFDS NDIKAGV