| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5838 |
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| Symbol | |
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| ID | 7975889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 542986 |
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| End bp | 546669 |
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| Gene Length | 3684 bp |
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| Protein Length | 1227 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796417 |
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| Product | outer membrane autotransporter barrel domain protein |
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| Protein accession | YP_002947691 |
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| Protein GI | 239820506 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATCGT GCGACGGCAA AGCGGGGCTC AAGCGTCTCG TCTCCATCAA GAACGAACGC
CCCGCAGCCG CACCGCGCCG CGCGCCATCG GCGAGCGTCG CCGCTTTTCC GGTTTCGGCC
ATTGCCCTTG CGGTGGCGTT GTTCGCGGCA TCGCCGCAGA TGGCGCGTGC TGCCAATGAG
TGCGGCGTTG AAGCAGCCGG GCAAGACACG CTCACCTGCT CGGGCACCAG CTATCTCAGC
GGCATCACCT ACACCCTCAG CAATGGGCTC ACGCTCAACC TCGACAACCC GAACATGGTG
ATTTCGGGAA AGGGCGTATC GCTTTCTTCG CCGGTCGGCC CGGTGGGTGC GACCCTCCAC
GTCAACGTGG CCAATATCGG CTCGATCACC ACCACCGGCT CGGCTGTGTC GGTGGATCAC
AACGGGACCG ACGGGCATGC GGCCGTGACC ATCAATGGCG GAACGCTCAC CAGCACGGGG
TCGGCCGCTA CTGTGCTGGT GCAAGGGGGT GGAACCAACA GAACGGACGC CCTCGTGACG
ATGAACGGCG GCACGGTGCT GAACACGGGC TCGGGTGTTG GGCTGAGTGC GACCGCGTCC
GGCGTCAATA GCAACGTCAT TGCGGCCGTC GTGATCAACG GGGGCACGGT TGACACAATC
AATACCGGTG TCTACACGAC CATGTCGGGC CTCAACAACT CGGGGGCGTC GAGCATCACC
ATGAATGGCG GATCTGTTCT GTCCAGAGGA GGAATCGGGC TTTGGGCGCG CCACGGCAGT
GTGGGGCTGG CTCAGGTGCA GATGACTGGC GGCCGAGTCG AGTCCAAGGG AATCAACGGC
GACGCCATCC TCGCTTCGAA CACCAACGGC ACCTATGCGG TCGAGGTGAC CGGCGGCACC
CTCATCGGCA GCAGCGGCTT TGGCGCGGCA ATCCACACCG CTGCCAAGGC CGGTGGCACC
GTCAACATCG GCGCAGGCGC GGTCGTCGAC GGCAGCGCTT CCGGCGTCGC CCTGCGCGAC
GGCGACTTAG TCCGCGACGG CATTGACGAG GTCGGCGGCA ACGCCATCAT CACCACCGCC
GGCACCCTCA CCGGCGCCGT GCTGCTCGGC GGCGGCACCG ACACCCTCAA CATCGCGGGC
GGCTCGATCG CCGGCAATCT CACCGGCGAC GGCGTCGACG CGCTGAACTT CAACCTCGGC
ACCAACAGCT TCACCCACGG CGCAGCCTAT GCCATCAGCG GCATGAACAG CGTCACCATG
AACTCGGGCA CCGCGCAGAT CGACAGCACC ATGGCCGGCA ACACGCTGAC CGTGAACGGC
GGCGCGATGA CGCTCAGCGG CGCCAACAGC TACACGGGCG GAACCTTCCT GAACGGCGGC
GTGCTGTCAG TGTCGAGCGA CGCCAACCTG GGCGATGCGG CCGGCGCGCT GAGCTTCGAC
GGCGGCACTC TGCGCACCAG CGCGGACTTT GCCTCGGCGC GGGCCGTGAG CCTTGGCGCG
GGTGGCGGCA CCTTCCAGGC GGATGCCAAC CTCGCGCTCT CGAGTGGCAT CACGGGCGCC
GGCGGCCTCA CCAAGACCGG CGCGGGCACG CTCACGCTCT CGGGCGCGAA CAGCTTTACC
GGCAGCACCA CCATTTCCGC GGGCACGCTC GCGCTTGCCG GCGCCGGCTC CCTCGCCGAT
TCGAGCCAGG TCATCGCCAA CGGCACTTTC GACATTGCCG GCGTGAGCGC GGCGGGCACC
AGCGTGCGGC GCCTCTCGGG CAGCGGCGCC GTCACGCTCG GCGGCAAGAC CCTCACGCTG
ACCGCCGCAC AGGACACCTT CAGCGGCGCC ATTGCAGGCA GCGGCAGCTT CGTGCTTGCG
GCCGGCACGC AGGTGCTGAC GGGTACCAAC ACCTACACCG GCGGCACGAC GATCAACGGC
GCAAGCACGC TGCAGCTTGG TAGCGGCGGT ACGTCGGGCT CCGTTGCGGG CAATGTGGTG
AACGATGGCA CGTTCGTCTT CAACCGCGCG AACCGGCTCG ATCTTGGCGG CGACATCTCC
GGAAGCGGCG TTATTCGCCA GATCGGTACG GGCATGACCA ACCTCACCGG CAACAGCGCG
GCCTTTGCCG GAGCGACCAC CGTCGAAGCC GGCACGCTGG CGGTCAACGG CGCGCTCGGC
GGCAGCATGA ATGTGCTGGC GGCGGGCCGG CTCCAGGGCT CGGGCTCGGT CGGCGGCACC
ACGGTCGCCG GCACGGTCGC ACCGGGCAAC TCCATCGGCA CGCTCAGCGT CAACGGCAAC
TTCGCGCAGC AGGCGGGCTC GACCTACCAG GTCGAAGTCG ATCCGGCCTC CACGGCTTCG
GACCTGCTGC GCGTGAGCGG CAGCGCGAGC ATCGCAAGCG GCGCGCGCCT GCAGGTGGTC
CGCACGGGCA ACGGCAGTTT CGGCATCGGC ACGCGCTACA CGGTGCTGAG CGCGGACGGC
GGCGTCATCG GCACCTACAA CCTGACGGGC GACACCGAGA GCGCTTTCGT CCGCGTGACC
GACAGCTACG ACGCGAACCA TGTCTACCTG CTGGCCCAGA AGACACGCAG CTTCACCGAG
CCCGCCACCA CGCCCAACCA GGTGGCCGTC GGCGGCGCAT TGGAGAGCCT GCCGGGCGCC
AACCCGCTGT CCACCGCCGT GGCGTGGCTC CCCAACGACT TCGCGGCACG CGACGCGCTG
AACCAGCTGT CGGCGGACAT CCATGCCTCC TCCAAGACCG CGGCGCTGGA AGACAGCCGC
TTCGTGCGCG AGGCCGCGAT CGATCGACTG CGCAGCGCGG CGTGCGCACC CGGCAGTGCG
GCGCCAACAC CGCAACAGGC CGGCACGGCC TGCACGCCCG AGGACGGCCA GGCGCGATCC
AGCTGGGGCC AGGTGTTCGG CTCCTGGGGC CGCATCGACA GCGACGGCAA TGCGGCCAAG
CTCAAGCGCG ACATCGGCGG GTTCTTCGTC GGTGCGGACA CCGGCATCGG CGCCGGTTGG
CGCGTGGGTG CGCTCGGTGG CTACAGCCGC GCGAGCGCAG ACACCAGCAC AAGCAACAGC
AGCAGCAAGA CCGACAGCTA TCACCTGGGC GTCTACGGCG GCACGCAGTG GGGTGCCACG
GCGCTGCGCC TGGGCGCGAG CCACAGCTGG AGCAAGACGG ACACGAGCCG TTCCGCCGCG
TTTGCGGGCT TCAACGACAC CTTGACGGGC AAGTACGACA GCACGACGAC GCAGGTGTTC
GGGGAAGTCG GCCATCGCCT CGCGATGGGC AGCGCCACGC TCGAGCCCTT TGCCGGGCTC
GCCCATGTGA CGCTCAAGAG CGACGCCTTC ATGGAGCACG GCGGCTTCGC CGCGCTCTAC
GGCCATGGCG GCAGCATCGA TGCGACCTTC TCGACCCTGG GCGTGCGCGC GAGCATGCAG
GCGAGCGAAA GCATGAAGCT GCGCGGCATG CTGGGCTGGC GCCATGCGTT CGGCGACACA
GTGCCGACAA GCACCCATTT GTTCGGCGGC AGCCTGCCGT TCACCATCGC CGGCGTGCCG
CTGGCGAAGA ACGTCGCCGT GCTGGAAGCC GGCGTCGAGA CGCAGCTGCG TCCGAACCTG
GCGCTGAGCG CCTCGTATTC AGGCCAGTTC GGGGACGGGC TCAGCGATCA TGGATTCAAG
GTCAACCTGA ACTGGGCGTT CTGA
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| Protein sequence | MTSCDGKAGL KRLVSIKNER PAAAPRRAPS ASVAAFPVSA IALAVALFAA SPQMARAANE
CGVEAAGQDT LTCSGTSYLS GITYTLSNGL TLNLDNPNMV ISGKGVSLSS PVGPVGATLH
VNVANIGSIT TTGSAVSVDH NGTDGHAAVT INGGTLTSTG SAATVLVQGG GTNRTDALVT
MNGGTVLNTG SGVGLSATAS GVNSNVIAAV VINGGTVDTI NTGVYTTMSG LNNSGASSIT
MNGGSVLSRG GIGLWARHGS VGLAQVQMTG GRVESKGING DAILASNTNG TYAVEVTGGT
LIGSSGFGAA IHTAAKAGGT VNIGAGAVVD GSASGVALRD GDLVRDGIDE VGGNAIITTA
GTLTGAVLLG GGTDTLNIAG GSIAGNLTGD GVDALNFNLG TNSFTHGAAY AISGMNSVTM
NSGTAQIDST MAGNTLTVNG GAMTLSGANS YTGGTFLNGG VLSVSSDANL GDAAGALSFD
GGTLRTSADF ASARAVSLGA GGGTFQADAN LALSSGITGA GGLTKTGAGT LTLSGANSFT
GSTTISAGTL ALAGAGSLAD SSQVIANGTF DIAGVSAAGT SVRRLSGSGA VTLGGKTLTL
TAAQDTFSGA IAGSGSFVLA AGTQVLTGTN TYTGGTTING ASTLQLGSGG TSGSVAGNVV
NDGTFVFNRA NRLDLGGDIS GSGVIRQIGT GMTNLTGNSA AFAGATTVEA GTLAVNGALG
GSMNVLAAGR LQGSGSVGGT TVAGTVAPGN SIGTLSVNGN FAQQAGSTYQ VEVDPASTAS
DLLRVSGSAS IASGARLQVV RTGNGSFGIG TRYTVLSADG GVIGTYNLTG DTESAFVRVT
DSYDANHVYL LAQKTRSFTE PATTPNQVAV GGALESLPGA NPLSTAVAWL PNDFAARDAL
NQLSADIHAS SKTAALEDSR FVREAAIDRL RSAACAPGSA APTPQQAGTA CTPEDGQARS
SWGQVFGSWG RIDSDGNAAK LKRDIGGFFV GADTGIGAGW RVGALGGYSR ASADTSTSNS
SSKTDSYHLG VYGGTQWGAT ALRLGASHSW SKTDTSRSAA FAGFNDTLTG KYDSTTTQVF
GEVGHRLAMG SATLEPFAGL AHVTLKSDAF MEHGGFAALY GHGGSIDATF STLGVRASMQ
ASESMKLRGM LGWRHAFGDT VPTSTHLFGG SLPFTIAGVP LAKNVAVLEA GVETQLRPNL
ALSASYSGQF GDGLSDHGFK VNLNWAF
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