Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5820 |
Symbol | |
ID | 7975871 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 525505 |
End bp | 526347 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644796401 |
Product | Conjugal transfer protein TrbG/VirB9/CagX |
Protein accession | YP_002947675 |
Protein GI | 239820490 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCCCC GGCCCGTGTA CCGCAGCTTT CCGCTGGCGC TCGGACTGGC GACAACTCTG GCGCTCGCCG CACCGTACGG CCGAGCCGCG ACCGTGCCGG CCGTCGGCAA GGTCGATGCC CGGGTACGGG TGGTCGCCTA CGACCCGGCG GACGTCATCA GCTTGCAGGG GTACGTGGGC TATCAGATCC ATCTGCAGTT TGCCGAAGGC GAGGAGTTCG TGAATCTCGG CTCCGGCGAC AACGGTGCCT TCGATATCGG TGCCGAGCGC AACCACTTCT TCATCAAGCC CAAGGAAGCG CGCGCCGCGA CCAACTTCAC GGTCCTCACG AACCTGCGGG CCTATCATTT CGACTACACC GTCTCCTCCA TCGCGCCGGT AGGCACTGCC GCCAGGCGCA TGGTGTATTC GATACGTTTC ACCTACCCGG AAGACGAGGT CCGGAAGGCA GCCGAGGATC AGGAACGGCG CCGGGCCGAG GCGCGCATGA GCGAAGGGGC GACCGATCGA CCACGCAACT CCGACTACTG GTTCTGCGGC AGCGATTCGC TCAAGCCCGT GAGCGCCCAC GACGACGGGG CGCAAACGCG TCTGCGTTTC CACACGCGCT CCGACTTCCC GGCGATGTTC GTCCAGAACG ACGACGGGTC CGAATCGCTG TTGAACTTCA ACGTCGACGC GGACGAGGTA GTGATTCACC GCGTGGCGCG CCGCTTCGTG CTGCGGCGGG GCGGGCTGGT CGGTTGCGTG ATCAACCGGT CCTTCGTCGG CGGCGGCGCG CGCACCCCCA CCAACACCAG CGCAACAGGT GTGCGGCGCA TCACGGCAGG AGATGGGCCA TGA
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Protein sequence | MKPRPVYRSF PLALGLATTL ALAAPYGRAA TVPAVGKVDA RVRVVAYDPA DVISLQGYVG YQIHLQFAEG EEFVNLGSGD NGAFDIGAER NHFFIKPKEA RAATNFTVLT NLRAYHFDYT VSSIAPVGTA ARRMVYSIRF TYPEDEVRKA AEDQERRRAE ARMSEGATDR PRNSDYWFCG SDSLKPVSAH DDGAQTRLRF HTRSDFPAMF VQNDDGSESL LNFNVDADEV VIHRVARRFV LRRGGLVGCV INRSFVGGGA RTPTNTSATG VRRITAGDGP
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