| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5817 |
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| Symbol | |
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| ID | 7974938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 522574 |
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| End bp | 523308 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644796398 |
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| Product | type IV secretion system family protein |
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| Protein accession | YP_002947672 |
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| Protein GI | 239820487 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02791] P-type DNA transfer protein VirB5 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAGAT TCCTTGTTGC CCTCTTCCTC GCGGCCACAG CCTCGCTCGC ACCGCCGCAC
GCGAAAGCCG GGATCCCGGT GATCGACATC ACGGCCGTCG CCAACCTGAT ACAGCAGGTC
ATGTACTGGC AGCAGCAAAT CTCCGGGATG CAGAAGCAGT ACGACCAGCT GAAGGAATCG
AAGGACCAGC TGACCCGGAC CCACAACGCC ATGACGGGAA GCCGAGGCAT GGAGCAGCTG
CTGCCGACCC CGGACCTCGC ACGCAACTAC CTGCCTCCCA GCTATGGCGA ACTGATGGGC
ACGCTCAACG GCTCGTCGGC CAGTTATGCC GGGCTGGCCA GCCAAGTCCA GTCGATCATG
AAAGCCAACA GCGTCCTCTC GGGAACCCAG TTGGAGGGGC TGAGTCCGGA GTTGCGCCAG
GTCGTCGAGC AAGGACGGCA ATCGGCAGCG CTGCTCAACG GAATGACCCA GAACGCGTAC
CAGAACACCA GCCAGCGCTT CTCGGCCCTG CAACTGCTGA TCGACCGCAT CGCTTCCGCA
CAGGATCCCA AGGCGATCCA GGACCTGCAG GCAAGAATCC AGGCCGAGCA GAACATGCTC
ACCAATGAGC AAACGAAGCT GCAGAGCCTT TATCAAGTCG CTCATTCTGA GGAGCTCATG
CGCAAACAGC GCGCGCGAGA ACAAGCTGCC TCGGGCATAG GTTCTATGCG ATCGCTCCCC
GCTGTCGACT ACTAG
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| Protein sequence | MRRFLVALFL AATASLAPPH AKAGIPVIDI TAVANLIQQV MYWQQQISGM QKQYDQLKES
KDQLTRTHNA MTGSRGMEQL LPTPDLARNY LPPSYGELMG TLNGSSASYA GLASQVQSIM
KANSVLSGTQ LEGLSPELRQ VVEQGRQSAA LLNGMTQNAY QNTSQRFSAL QLLIDRIASA
QDPKAIQDLQ ARIQAEQNML TNEQTKLQSL YQVAHSEELM RKQRAREQAA SGIGSMRSLP
AVDY
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