| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5773 |
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| Symbol | |
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| ID | 7974894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 477473 |
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| End bp | 479164 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796354 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002947628 |
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| Protein GI | 239820443 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.120445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCA GGCCGCCGCA CTTCCGCTTC TGGCCCAAGG GCGTGGCGCG CGAGCTGCGC
GTGCCGCGCG CCACGCTGCC CGACTACCTG GACACCGCGG CGCGCCGCTA TCCCGGCAAG
CCCGCCATCG TCTACTGCGG CGCGGCCACC TCCTATGCGC AGCTGCGCGA ACGCGTCGAC
GCGCTGGCCG GCTACCTGCA GCAGCGCCTG GGCGTCGCGC CCGGCGACCG CGTGCTGCTC
GCGAGCCAGA ACTGCCCGCA GTTCGTGACG GCCTTCTACG CCGTGCTGCG CGCGGGCGCC
GTGGTGGTGC CGGTGAACCC GATGAGCAAG GCCGCGGAGG TGCGGCACTA CGCGGCAGAC
AGCGGTGCGC GCATCGCCTT CGTCGCGCAG GAGCTGCTGC CCGTGCTCGC GTTCGGCGAA
GGCGAAGGCG AGCTGCGCGC CGCGCTCGTC CATGCCTATG CCGACGCGAT TGATGCGTCG
GCGAGCGACG ACGCGCTGCC CGGCTGGGTC ACGGCGCCGC GCGCGCCACT CGACGACGCG
CGACTGCATG GCTTCGAGCA GGCGATCGCG CTCGGCCTCG CGCCCGCGGC ATTGCCCCTG
TTGCCCGACG ACCTGGCCGT GCTGCCCTAC ACCTCGGGCA CCACAGGCCA CCCGAAGGGC
TGCATGCACA CCCATGCGAC GCTGCTGGCC TCGCTCGCTT CCTCGGCGGT GTGGAAGCAG
CTGCATGTGG AGACGGTCAC GCTGGCCGTT GCGCCGCTCT TCCACATGCT GGGCCTGCAG
AACGGCATGA ACCTGCCGAT GTTCCTGGGC GCCACCGCGG TGATGATGCC GCGCTGGGAC
CCGGCGATGG CCGCGCGCCT GATCGAGCGC CATGCGGTCA CGGCCTGGTC GGCGCCGCCG
GCGATGGTGA TCGACCTGTT CTCCCACGCC GAAGCCGAGC GGCGCGACCT CTCGAGCCTG
GCGCTGCTGT CGGGCGGCGG CGCCGCGATG CCCGAGGCGG TGGCCGCCAT GCTCCTGCAG
CGCCGCGGCC TTTCGTACAA CGAAGGCTAT GGCCTGACCG AGACCGCATC CTTCCTGCAC
GCCAATCCGC CCGCACGCGG CAAGCGCCAG TGCCTGGGCA CGCCGACGCA GGGCGTGGAC
TCGCGCATCG TCGATCCGGT CACGTTCGAG GAACTGCCGC CTGGCGAGGT GGGCGAGCTG
GTCACGCGCG GCGCGCAGCT CATGAAGGGC TACTGGCGCA ACCCGGAGGC TGACCGCGAG
GCCTTCATCG AGATCGGCGG CCAGCGCTTC TTCCGCACCG GCGACCTGGC CTCGATGGAC
GAGGACGGCT ACTTCTTCCT GCGCGACCGG CTCAAGCGAA TGATCAATGC CTCGGGCTAC
AAGGTCTGGC CCACCGAAGT GGAGAACGCG ATGTACGAGC ATCCGGCCAT CCACGAGGCC
TGCGTGATCG CGGTGCCCGA CGGCAGGCGC GGCGAATCGG TCAAGGCGCT GGTGGTGCTC
AAGCCCGCGC TGCGCGGCCA CGTCGCCGAA GAGGACATCG TCGCCTGGTG CCGCGAGCGC
ATGGCCGTCT ACAAGGCGCC GCGCGTGGTC GAGTTTCTCG ACAGCCTGCC GAAGTCCGGC
ACCGGAAAGA TCCTCTGGCG CGAACTGCAG GAAGCGCAGC GCGCCGCTGC CCAGGAGCAA
GCACACCCAT GA
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| Protein sequence | MNARPPHFRF WPKGVARELR VPRATLPDYL DTAARRYPGK PAIVYCGAAT SYAQLRERVD
ALAGYLQQRL GVAPGDRVLL ASQNCPQFVT AFYAVLRAGA VVVPVNPMSK AAEVRHYAAD
SGARIAFVAQ ELLPVLAFGE GEGELRAALV HAYADAIDAS ASDDALPGWV TAPRAPLDDA
RLHGFEQAIA LGLAPAALPL LPDDLAVLPY TSGTTGHPKG CMHTHATLLA SLASSAVWKQ
LHVETVTLAV APLFHMLGLQ NGMNLPMFLG ATAVMMPRWD PAMAARLIER HAVTAWSAPP
AMVIDLFSHA EAERRDLSSL ALLSGGGAAM PEAVAAMLLQ RRGLSYNEGY GLTETASFLH
ANPPARGKRQ CLGTPTQGVD SRIVDPVTFE ELPPGEVGEL VTRGAQLMKG YWRNPEADRE
AFIEIGGQRF FRTGDLASMD EDGYFFLRDR LKRMINASGY KVWPTEVENA MYEHPAIHEA
CVIAVPDGRR GESVKALVVL KPALRGHVAE EDIVAWCRER MAVYKAPRVV EFLDSLPKSG
TGKILWRELQ EAQRAAAQEQ AHP
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