Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5725 |
Symbol | |
ID | 7975778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 437621 |
End bp | 438325 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644796306 |
Product | B3/4 domain protein |
Protein accession | YP_002947580 |
Protein GI | 239820395 |
COG category | [S] Function unknown |
COG ID | [COG3382] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACTCTT TCTTCTTCTC TCATTCGCCG GAAATCTGGC AGCGCCATCC CGAACTGGTG CCCGGCGTCC TGCTGGCCCA GGGCATCCAC CGGAACGCCT GCGTGCAGGC GCAGGTGGCG CACTACCACG GCGTGGCGCG CGCACGGCTC GAAACCGTCG GCTCGGAAGC CGATCTTCCG GAGATCCAGG CCTGGCGCCG CACCTTCGCA CGCATGGGGC TCAAGCCCAC GCAGTACCGG TGCGCCTCCG AGTCGCTGCT GCGCCGGTTC AGGAAGGAAG GCGCGCTGCC GCCGATCCAT CCGCTCGTCG ATTTGTGCAA CGCGCTGTCG CTGGCCTTCG CGATTCCGAT CGCGGTGTTC GACCTGTCGA AGGTGGCCGA GGGGCTGCAA GTGCGGTGCG CCGACGGCAG CGAAAGCTAC CTCGCGTTCT CGGGCGAAAC GGAAACGCCC GAACGCGGCG AAGTCGTCTT TGCGGATGCC GCAGGCTGCG CGCATGCGCG GCGCTGGACC CATCGCCAGA GCGCGCTTTC GGCCGTGCGC GATGAAACCT CCCGCGTCCT CATCGTGGCC GAGGCCCTGC ATGCGGATGC CGCCAACGAT GTCCGGCAGC TGCTGGATGC ACTGTCCCGG GCATTGGCCG AGACCTGGGC GCCGCCGGCC GCGAGCGCGC TGTTGCGGCA AGACGCGCCC CGCCTGGTGT TCTGA
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Protein sequence | MHSFFFSHSP EIWQRHPELV PGVLLAQGIH RNACVQAQVA HYHGVARARL ETVGSEADLP EIQAWRRTFA RMGLKPTQYR CASESLLRRF RKEGALPPIH PLVDLCNALS LAFAIPIAVF DLSKVAEGLQ VRCADGSESY LAFSGETETP ERGEVVFADA AGCAHARRWT HRQSALSAVR DETSRVLIVA EALHADAAND VRQLLDALSR ALAETWAPPA ASALLRQDAP RLVF
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