Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5674 |
Symbol | |
ID | 7975727 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 381046 |
End bp | 381930 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644796257 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002947531 |
Protein GI | 239820346 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.949814 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAATCC GCCACCTCCG CTGCCTTATC GCCGTGGCCG AAGAGCTGCA CTTCGGGCGC GCGGCGCAGC GCCTGAACCT GTCGCAGCCG CCCGTGAGCC TCGCGATCAA GGAGATGGAG GAAGAACTGG GCGTCACGCT GTTCGAGCGC ACCTCGCGCC GCATCGCGAT CACGCGCGCT GGGGACGAAG CGCTTCGCGA TGCGCGCGCC GTGCTGCTCG GCATGGACAC GCTGCGCCGG CGCGCGCAGG AGGCCGCGGC CGGGCTCATG GGATCGATCT CGATCGGCTT CATCAGCCTG CCGGCCTATT CGTTCTTGCC GCGGGTGCTG CGGCAGTTCT CGGACGAGAA CGAGCGGGCC GAGATCGCGC TGTGGGAGGG CACGACCGAC CAGATCATCG GCGACGTCGA ATCGGGCCGG CTCGACGTGG GCCTGGTGCT GCAGCCGTCC AGCATGCCCG CCTCGCTGGG CTCGCGGCTG GTGCAGAAGG ATGCGCTGAT CCTCGCGATG CCCGAGGCGC ATCCGCTGGT GCGGCCCGGC AGCATTGCGC TCGAAAAATT CTCGGGCGAG CGCTTCCTGG GCTTCGAGCG GCACTTCGGG CCGCAGGTGT TCGATGCGAT CGTGGCCACC TGCATGCGGC GCGGCTTCAG CCCGCGCCTG TTTCCGGCGC GCCAGATGCA CACCATCGTG AGCCTGGTCT CGGGCGGGCT GGGCGTGGCG CTGGTGCCGG CCTGCGTCAA GGCGCTGCAC CGCGAAGGCG TGGCGTACCG CTCGCTCAAG GGCGAGAAGA CCTACATCGA CACCCTGGCG GTGTGGCGCA AGGCGGACGA TTCGCCGCTG GTGCGCGCAC TGCTGGCGCT GCTGCCGACG CTCAGCAGCG TCTGA
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Protein sequence | MEIRHLRCLI AVAEELHFGR AAQRLNLSQP PVSLAIKEME EELGVTLFER TSRRIAITRA GDEALRDARA VLLGMDTLRR RAQEAAAGLM GSISIGFISL PAYSFLPRVL RQFSDENERA EIALWEGTTD QIIGDVESGR LDVGLVLQPS SMPASLGSRL VQKDALILAM PEAHPLVRPG SIALEKFSGE RFLGFERHFG PQVFDAIVAT CMRRGFSPRL FPARQMHTIV SLVSGGLGVA LVPACVKALH REGVAYRSLK GEKTYIDTLA VWRKADDSPL VRALLALLPT LSSV
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