Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5653 |
Symbol | |
ID | 7975265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 359095 |
End bp | 359901 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644796237 |
Product | citrate synthase |
Protein accession | YP_002947511 |
Protein GI | 239820326 |
COG category | [C] Energy production and conversion |
COG ID | [COG0372] Citrate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0675936 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATCG GAAAGTCCAC CGTCCCGCGC ACCGCCATCT GCACCTCGGA CGAACACACC ATCGTCGTGC GCGGCCAGGA CCTGTGCCGG GAGCTGATCG GGCACCTGTC GTTCACAGAT TATTTCTTCC TGCTGCTCAC CGGGCGCCGC CCCGATGCCG CGTGCAGCAC GGTGCTCGAC GCCACGCTGG TGGCAATTGC CGAGCACGGC CTTGTGCCGA GCGTGCAGGC CAGCCGCATG ACCTTCGCGG CCGCGCCCGA TGCGCTGCAG GGCGCGGTGG CGGCCGGCAT CCTCGGCTGC GGCTCCGTCA TCCTCGGCGC GTCCGAAACC GCGGGCCGGC TGTTCATCGA GGTGGCGGCG CGCGTGGATG CGGGCGCCAC GCTGCCGCAG GCCGCCGCCG CGGCCATCGC CGAACTCAAG GCCGCGCGCG CCGCGATCCC CGGTTACGGC CATCCGCTGC ACAAGGAACG CGATCCGCGC GTCGACCGGC TGATCGACGT GGCGACGCAG GCCGGCGCCG ACCTGCGCTA TGTGCGCATC GCGCAGGCGC TGGAAGAGGC GATCCCGGCC ATCGTCGGCA AGGACCTGCG CATGAACGTC TCGGCGGCGA TTCCGGCGGT GCTGCTGGGC GTGGGCTTTC CGGTGGCGTC GCTGCGCGGC GTGCCGATCC TCGCGCGCAC CGCGGGGCTG ATCGCACACC TCGCGGAAGA GGCCGAGATG CCGAGCGGCT TTGCGCTGTC CTACCAGGCC ACGCGCGAGC TGCAGTACGA AGGCACCGTG CCCGCGGGCT TCGGGGAGGC GCGGTGA
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Protein sequence | MKIGKSTVPR TAICTSDEHT IVVRGQDLCR ELIGHLSFTD YFFLLLTGRR PDAACSTVLD ATLVAIAEHG LVPSVQASRM TFAAAPDALQ GAVAAGILGC GSVILGASET AGRLFIEVAA RVDAGATLPQ AAAAAIAELK AARAAIPGYG HPLHKERDPR VDRLIDVATQ AGADLRYVRI AQALEEAIPA IVGKDLRMNV SAAIPAVLLG VGFPVASLRG VPILARTAGL IAHLAEEAEM PSGFALSYQA TRELQYEGTV PAGFGEAR
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