Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5622 |
Symbol | |
ID | 7975234 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 326696 |
End bp | 327595 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644796206 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002947480 |
Protein GI | 239820295 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.812552 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGCAC CGGACTTCAG AACGCTCCGC TACTTCGTGG CCGTGGCCGA GGAACGCAGC GTGGGCAAGG CGGCACGTCG GCTCAACATG GCCCAGCCGC CGCTGTCGGT CCACATCAAG AACCTGGAGG CGGCGGTGGG CACGCCGCTG TTCCGCAGGG CGGCGCGCGG CATGGAGATC ACCGACGCCG GCCATGCGCT CTTCCAGCGT GCCAAGGAGG CGCTGCTGCT TGCCAACGAA GGCTTCGACG CGGCACGGGC GATCGGCTCG GGCAGCAGGG GCCGGCTCAC CGTCGGCACC ATGGTCGTGC TGTCCTACCT GGTGCTTCCT CGCCTGGAAA ACACGCTTCG GGCGAAGCTG CCGGACGTGG AGATCCAGTA CGTGGAGCTG AACGCTGCCA ACAACGTCTC GGCCCTCACT GATTCGCAGG TGTCGGTGGC GATCTGCATC CCGCCCATCG CCCACGCGGG CATTGCGGCC GAACGCATCG GAACCCAGCC GCTGATGCTG GCCGTGCGCG CGGATTCGCC GCTGGCCCGC ATGTCCAGCA TTCCGATGGA GCGGCTGTCA GGCATGCCCC TCATCGGGCT GCCCGTGCCC GATGGCGACG TCGACAAATC GCTCATTGCC TCGATGCTTC GGCGGCACGA TGTCAGCATG CCGATCGCGC AGCGGGTCGA GACCATGGTG TCGGCGTTGG CGCTCGTCCT CGCAGGCAGG GGCGTGGCCA TCCTGCCCGC CTGCGCCCGG ATCGGCCGGC CTCCGGGCGT GGTGTTCCGC CCCTTGCGGA ACGTCGATGC AAGGATGGAC ATCGCTGCCT GCTGGCGCAG CGATTGGCAG AGTCCGCTCA TCGAACCCTT CCTGGCCTGC GCGCGCGCCT CTCTGCGGCA AGCTGCGTAG
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Protein sequence | MAAPDFRTLR YFVAVAEERS VGKAARRLNM AQPPLSVHIK NLEAAVGTPL FRRAARGMEI TDAGHALFQR AKEALLLANE GFDAARAIGS GSRGRLTVGT MVVLSYLVLP RLENTLRAKL PDVEIQYVEL NAANNVSALT DSQVSVAICI PPIAHAGIAA ERIGTQPLML AVRADSPLAR MSSIPMERLS GMPLIGLPVP DGDVDKSLIA SMLRRHDVSM PIAQRVETMV SALALVLAGR GVAILPACAR IGRPPGVVFR PLRNVDARMD IAACWRSDWQ SPLIEPFLAC ARASLRQAA
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