| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5534 |
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| Symbol | |
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| ID | 7975391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 237305 |
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| End bp | 238519 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796119 |
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| Product | Mandelate racemase/muconate lactonizing protein |
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| Protein accession | YP_002947393 |
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| Protein GI | 239820208 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCCCT CCATGAAGAT CACGCAAGTC GATACGGTCC ACGCGGCCGC CTATCCCAAC
ATCCTGTGGG TGCAGATCCA CACCGACACC GGCCTGGTGG GCCTGGGGGA AACCTTTCGT
GGCGCCCAGG CCGTGCAGGC GCAGATCCAT GAACTGATCG CGCCCTACCT GCTGGGAAAG
GATCCGCTCG CCATCGAAGC CCACAGCCAG CACCTGCTGT ACGGCTATAT CGGCTTTGCC
AGCAGCGGCG CCGAAACGCG CGCCGCTTCG GCGGTCGACA TCGCGCTGTG GGATCTGTTC
GGCCAGGTCA CGCAACAGCC GCTCTACCAG TTGCTCGGCG GCGCCGTGCG CGAACGCGTC
CCGGTCTACA ACACCTGCGC GGGCTACACC TACAACAAGG CCCCACAGCG TCGCTCGGTG
ACGCAGGCCA GCGCCGACGT CGCGCCCGAA GGGCCTTACG AGGACCAGGT TGCATTCGTC
AAGCGCCCGG CGGCGTTGGC CGAAAGCCTG CTGTCCGAGG GCTACAAGGC GATGAAGATC
TGGCCCTTCG ATCCCTTCGC CCAGGCCAGC GGCGGGCAGT CGATTTCGGC CCGCGACCTG
GACACTGCGC TCGAGCCGTT CCGCGAAATC CGGCGCGCTG TCGGCTACGA GATGGACATC
ATGGTGGAGC TCCATTCGAT GTGGAACCTG CCGATGGCCG TGCGGATCGC GCAGGCGCTC
GAGGAGTTCA AGCCCTATTG GGTCGAGGAC CCGATCCAGA TGTCCAACCT CGACACGATC
GCCGAATTCC GTTCGCGCAC CCGCATTCCG GTCTGCGGCA GCGAGACGCT GGCCACCGTC
CAGCCATTCA TCCAGCTGCT CAAGAACAAT GCGGTGGACT ATGTGATGCT GGACCTGGGC
TGGGTCGGGG GTCTCTCCGA AGCCAGAAAG ATCGCGACCC TGGCGAAGGC CTTTCACAAA
CCAGTCGCGC CGCATGACTG CACCGGCCCG GTCGTGCTCG CGGCGTCGCT CCACCTGGCG
ATGAGCACGA CCAACGTGGT GCTGCAGGAA GTGGTGCGCG CTTACCTGGG AGGCTGGTAT
CGCGAGCTCG TGACGCAATT GCCCGATGTC CGCGCCGGCC ATGCGACGGT TCCGCCCGGC
GCGGGCCTGG GCCTGGCACT GTCGCCGGCG CTGCTGCAGC GGCCTGACGT CACCATCCGC
AGTTCGAAGT CGTGA
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| Protein sequence | MPPSMKITQV DTVHAAAYPN ILWVQIHTDT GLVGLGETFR GAQAVQAQIH ELIAPYLLGK
DPLAIEAHSQ HLLYGYIGFA SSGAETRAAS AVDIALWDLF GQVTQQPLYQ LLGGAVRERV
PVYNTCAGYT YNKAPQRRSV TQASADVAPE GPYEDQVAFV KRPAALAESL LSEGYKAMKI
WPFDPFAQAS GGQSISARDL DTALEPFREI RRAVGYEMDI MVELHSMWNL PMAVRIAQAL
EEFKPYWVED PIQMSNLDTI AEFRSRTRIP VCGSETLATV QPFIQLLKNN AVDYVMLDLG
WVGGLSEARK IATLAKAFHK PVAPHDCTGP VVLAASLHLA MSTTNVVLQE VVRAYLGGWY
RELVTQLPDV RAGHATVPPG AGLGLALSPA LLQRPDVTIR SSKS
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