Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5436 |
Symbol | |
ID | 7975130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 139311 |
End bp | 140066 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644796024 |
Product | NmrA family protein |
Protein accession | YP_002947298 |
Protein GI | 239820113 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGATCG TCGTCATCGG CGGCTCGGGC CTCATCGGCT CCAAGGTCGT CAGCAAGCTG CGCGAAGCCG GCCATGAGGT CGTTGCCGCA TCGCCCGCAT CGGGCGTCAA CACCATCACC GGCGAAGGCC TGGCCGAGGC CCTCAAGGGC GCGCAGGTGG TGCTGGACGT GGCCAACTCG CCTTCGTTCG AGGACAAGGC CGTGCTCGAA TTCTTCGAGA CCTCGGGGCG CAATCTCCTG GCCGCGGAAG CCGTGGCCGG CGTGAAGCAC CACGTCGCGC TGTCGGTGGT CGGCACCGAC CGCCTCTCCG AAAGCGGCTA CTTCCGCGGC AAGATCGCAC AGGAAAAGCT GATCCGCGAA TCGAAGATTC CCTACACCAT CGTCCATTCG ACGCAGTTCT TCGAATTCCT CGGTGGCATT GCGCAGTCGG GCACCGACGG CGACACCGTG CGCCTCTCGC CGGCCTTCGT GCAGCCGATC GCATCGGACG ACGTCGCGGC CGCCGTGGCC GACTACACCC TGGGCAAACC AGTGAATGGC GTGGTCGAGA TTGCCGGCCC CGAGCGCGTT CGCCTGTCCG ACCTGGTGCA GCGCTTTCTC GCCAAGACCA GCGATCCGCG CAAGGTCGTC CAGGACGTGC ACGCGCGCTA CTTCGGTGCG GAGCTGAAGG ACGAAACGCT GGTGCCCGGT CCCAACCCGC GCATCGGTGC CCTCGGCTTC GAAGCCTGGT TCGCGCTGCC CAAGCCGGCA CGCTGA
|
Protein sequence | MKIVVIGGSG LIGSKVVSKL REAGHEVVAA SPASGVNTIT GEGLAEALKG AQVVLDVANS PSFEDKAVLE FFETSGRNLL AAEAVAGVKH HVALSVVGTD RLSESGYFRG KIAQEKLIRE SKIPYTIVHS TQFFEFLGGI AQSGTDGDTV RLSPAFVQPI ASDDVAAAVA DYTLGKPVNG VVEIAGPERV RLSDLVQRFL AKTSDPRKVV QDVHARYFGA ELKDETLVPG PNPRIGALGF EAWFALPKPA R
|
| |